TABLE 1.
RNA target | Probe sequence (5′-3′) | Forward primer sequence (5′-3′) | Reverse primer sequence (5′-3′) |
---|---|---|---|
18 SrRNA | ACCGGCGCAAGACGCACCAG | CGCCGCTAGAGGTGAAATTCT | CATTCTTGGCAAATGCTTTCG |
TLR1 | TCAGCCTCAAGCATTTGGACCTCTCCT | TGATCTTGTGCCACCCAACA | GCAGGGCATCAAAGGCATTA |
TLR2 | CGTTTTTACCACCCGGATCCCTGTACT | AAGATGCGCTTCCTGAATTTG | TCCAGCGTCTGAGGAATGC |
TLR4 | CCTGGTGTAGCCATTGCTGCCAACA | CCTCTGCCTTCACTACAGAGACTTT | GTGGAAGCCTTCCTGGATGA |
TLR5 | TGGTAATATCTCCCTGTTCTTCAGACGGCA | AACTTGACTTGCTCATAGGTGTGATC | CAGCCTCGGAAAAAGGCTATC |
TLR6 | AGCCAAGACAGAAAACCCATCGTGGG | TCTGGGATAGCCTCTGCAACA | GGCGCAAACAAAGTGGAAAC |
TLR9 | CGACCATGCCCCCAATCCCTG | TGATGTGGGTGGGAATTGC | GGGACTTTTGGCCACATTCTAT |
MD2 | TCTTTTCGACGCTGCTTTCTCCCATATTG | GGAGATATTAAATCATGTTGCCATTTATT | ACCACTGTTGCTTCTCAGATTCAG |
MyD88 | CCCTTGGTCGCGCTTAACGTGG | CTGGACTCCTTCATGTTCTCCAT | GATAGGCGGCGCCTCACT |
TIRAP | TGCCGTGTGCTGCTCATCACTCC | TGCCAGGCACTGAGTCGTAGT | GGCCTGCAGCATCTGGTACT |
TNF-α | TCAGCCTCTTCTCATTCCTGCTTGTGG | TCCAGGCGGTGCCTATGT | CGATCACCCCGAAGTTCAGT |
iNOS | CTTCCGGGCAGCCTGTGAGACCT | CGCAGCTGGGCTGTACAA | TGATGTTTGCTTCGGACATCA |
Primers and probes were designed by using the Primer Express software program (PE Applied Biosystems). The probes were labeled with the fluorescent reporter dye 5-carboxyfluorescein at the 5′ end and with the quencher N,N,N,N′-tetramethyl-6- carboxyrhodamine at the 3′ end.