AE	Affinity enrichment
AP	Acetone precipitation
ACTA	Alpha-actin
ACTN	Alpha-actinin
BAC	Benzyldime-thyl-n-hexadecylammonium chloride
BAC-DROP	BAC-gel dissolution to digest PAGE-resolved objective proteins
BN	Blue native
CA	Carbonic anhydrase
CID	Collision-induced dissociation
CoFGE	Comparative two-dimensional fluorescence gel electrophoresis
COL	Collagen
CSQ	Calsequestrin
DC	Differential centrifugation
DDA	Data-dependent acquisition
DG	Dystroglycan
DIA	Data-independent acquisition
DIGE	Difference gel electrophoresis
ELISA	Enzyme-linked immunosorbent assays
ESI	Electrospray ionization
ETD	Electron transfer dissociation
FABP	Fatty acid-binding proteins
FASP	Filter-aided sample preparation
FAIMS	High-field asymmetric ion mobility spectrometry
FTMS	Fourier-transform ion cyclotron resonance mass spectrometry
GE	Gel electrophoresis
GeLC	Gel electrophoresis-liquid chromatography
HCD	High-energy collision dissociation
ICAT	Isotope-coded affinity tags
ICPL	Isotope-coded protein labelling
IEF	Isoelectric focusing
IMAC	Immobilized metal affinity chromatography
iST	In-StageTip
iTRAQ	Isobaric tags for relative and absolute quantitation
LC	Liquid chromatography
LFQ	Label-free quantification
MALDI	Matrix-assisted laser desorption/ionization
MLC	Myosin light chain
MS	Mass spectrometry
MS/MS	Tandem mass spectrometry
MudPIT	Multidimensional protein identification technology
MW	Molecular weight
MyHC	Myosin heavy chain
MYOM	Myomesin
m/z	Mass-to-charge ratio
nMS	Native mass spectrometry
PAGE	Polyacrylamide gel electrophoresis
PASEF	Parallel accumulation serial fragmentation
PCT	Pressure cycling technology
PEA	Proximity extension assays
pI	Isoelectric point
PRM	Parallel reaction monitoring
ProFiT	Proteomics-high-throughput-Fiber-Typing
pSCoPE	Prioritized single-cell proteomics
PTM	Post-translational modification
RTS	Real-time search
RyR	Ryanodine receptor
SDS	Sodium dodecyl sulfate
SERCA	Sarcoplasmic or endoplasmic reticulum calcium ATPase
SILAC	Stable isotope labelling by amino acids in cell culture
SOMA	Slow Off-Rate Modified Aptamers
SP3	Single-pot solid-phase-enhanced sample preparation
SPS	Synchronous precursor selection
SR	Sarcoplasmic reticulum
SRM/MRM	Selected/Multiple Reaction Monitoring
S-Trap	Suspension trapping
SWATH-MS	Sequential window acquisition of all theoretical mass spectra
TDA	Targeted data acquisition
TIMS	Trapped ion mobility spectrometry
TMT	Tandem mass tag
Tn	Troponin
ToF	Time-of-flight
TPM	Tropomyosin
UC	Ultracentrifugation
USP3	Universal solid-phase protein preparation
VDAC	Voltage-dependent anion-selective channel protein
XL-MS	Cross-linking mass spectrometry