TABLE 1.

Bacteriophage ΦJL001 ORFs and putative genes

ORF	Positions (bp)	Protein size (amino acids)	Accession no.	E value	Significant match	Conserved domain	Function
1	1-375	125	NSa
2	372-854	161	NS
3	904-1020	39	NS
4	1017-1277	87	NP_772739	2.00E-06	Bradyrhizobium japonicum genome
5	1294-2931	546	NS
6	3070-3249	60	NS
7	32534773	507	ZP_00060797	8.00E-14	Hypothetical protein (Clostridium thermocellum)	COG0553.1	HepA, SNF2 family of DNA/RNA helicases
8	4770-5126	119	NS
9	5243-5479	79	NS
10	5472-6032	187	NS
11	6078-6878	267	NS
12	6974-7471	166	NS
13	7468-8673	402	NP_539536	3.00E-94	Exodeoxyribonuclease V alpha chain (Brucella melitensis)	COG0507.1	RecD, exonuclease V
14	8670-10478	603	ZP_00005311	1.00E-135	Hypothetical protein (Rhodobacter sphaeroides)	COG0209.1	NrdA, ribonucleotide reductase
15	10494-10916	141	NS
16	10929-11507	193	NP_817561	7.00E-08	gp114 (mycobacteriophage CJW1)
17	11578-11778	67	NS
18	11832-12287	152	NS
19	12271-13137	289	NP_821395	6.00E-10	Hypothetical protein (Streptomyces avermitilis)
20	13134-13490	119	NS
21	13497-13622	42	NS
22	13637-14455	273	Q06718	1.00E-04	Beta-glucosyl-hydroxymethyl cytosine-alpha-glucosyl-transferase (phage T6)
23	14472-15071	200	NS
24	15068-16120	351	P31654	6.00E-32	Deoxyuridylate hydroxymethyltransferase (phage SPO1)	COG0207.1	ThyA, thymidylate synthase
25	16095-16688	198	NS			COG1896.1	Predicted hydrolases of HD superfamily
26	16685-17113	143	NS
27	17110-17361	84	NS
28	17361-19256	632	NP_229419	6.00E-33	DNA-directed DNA polymerase 1 (Thermotoga maritima)	COG0749.1	PolA, DNA polymerase 1
29	19253-19492	80	NS
30	19509-20243	245	NP_635521	4.00E-26	Deoxycytidylate deaminase (Xanthomonas campestris)	COG2131.1	ComEB, deoxycytidylate deaminase
31	20240-20683	148	NS
32	20742-20972	77	NS			cd00093.2	Helix-turn-helix XRE family-like proteins
33	21078-23321	748	ZP_00048756	5.00E-42	Hypothetical protein (Magnetospirillum magnetotacticum)	pfam05272.1	VirE, virulence-associated protein E
34	23407-23775	123	NS
35	23861-24127	89	NS
36	24124-24435	104	NS
37	24432-24911	160	NS
38	24908-24997	30	NS
39	25072-25272	67	NS
40	25269-25643	125	NS
41	25654-26037	128	NS
42	26037-26282	82	NS
43	26285-26467	61	NS
44	26552-26797	82	NS
45	26809-27453	215	NS
46	27658-27921	88	NS
47	27965-28141	59	NS
48	28155-28322	56	NS
49	28331-28582	84	NS
50	28579-28941	121	NS
51	29059-29277	73	NS
52	29274-29558	95	NS
53	29555-29785	77	NS
54	29808-29990	61	NS
55	30058-30264	69	NS
56	30261-30464	68	NS
57	30461-31132	224	NS
58	31302-31382	27	NS
59	31498-32127	210	NS
60	32124-33653	510	ZP_00045650	6.00E-27	Bacteriophage terminase large subunit (Mesorhizobium loti)
61	33653-35212	520	CAB53859	1.00E-15	62-kDa structural protein (bacteriophage MB78)
62	35202-35438	79	NS
63	35428-36639	404	ZP_00127008	7.00E-35	Hypothetical protein (Pseudomonas syringae)	pfam04233.3	Phage Mu F-like protein, minor head protein
64	36636-36863	76	NS
65	36860-36976	39	NS
66	37041-37214	58	NS
67	37281-38150	290	NP_405657	4.00E-06	Hypothetical phage protein (Yersinia pestis)
68	38296-39420	375	NP_690674	2.00E-41	Coat protein (bacteriophage SPP1)
69	39514-40329	272	NS
70	40346-41026	227	NS
71	41030-42331	434	NS
72	42328-42693	122	NS
73	42696-43718	341	NS
74	43718-45445	576	NS
75	45445-45633	63	NS
76	45617-46516	300	NS
77	46513-46905	131	NS
78	46902-47312	137	NS
79	47309-48967	553	NS
80	48977-49108	44	NS
81	49171-49584	138	NS
82	49909-50349	147	NP_791903	7.00E-04	Hypothetical protein (Pseudomonas syringae)
83	50351-52609	753	NP_536371	6.00E-23	Putative tail length tape measure protein	COG5281.1	Mu-like prophage protein
84	52609-53229	207	ZP_00004532	2.00E-31	Hypothetical protein (Rhodobacter sphaeroides)	COG5448.1	Uncharacterized conserved protein
85	53231-55000	590	ZP_00004533	2.00E-31	Hypothetical protein (Rhodobacter sphaeroides)	COG5449.1	Uncharacterized conserved protein
86	55006-55434	143	NP_421571	9.00E-06	Hypothetical protein (Caulobacter crescentus CB15)	COG0791.1	Cell wall-associated hydrolases
87	55435-58893	1153	ZP_00011489	2.00E-35	Hypothetical protein (Rhodopseudomonas palustris)
88	58897-60360	488	NS
89	60365-62989	875	ZP_00055704	6.00E-05	Hypothetical protein (Magnetospirillum magnetotacticum)
90	63040-63306	89	NS
91	63312-63632	107	NP_543082	7.00E-26	Putative endolysin (bacteriophage P27)

^aNS, not significant.