Table 2.
Genome of 4995/20 isolate of E. faecium
| Contig | Size (bp) | Copy numbera | %GC | CDSsb | AMR gene(s)c | Virulence-associated genesd | Plasmid rep typee | ISsf |
|---|---|---|---|---|---|---|---|---|
| Chromosome | 2 726 121 | 1.0 | 38.3 | 2522 | aac(6′)-Ia, vanB operon, msr(C) |
acm efaAEfm espEfm |
n/a | n/d |
| Plasmids | ||||||||
| p4995_1 | 282 637 | 3.4 | 35.8 | 298 | ant(6’)-Ia, aac(6')-aph(2″) | hylEfm | repUS15DO3 | IS16 IS256 (3) IS1062 (2) IS1216 (2) IS1251 IS1252 (5) IS1297 IS1476 (3) IS1485 (2) ISEf1 (3) ISEfa4 (2) ISEfa5 (2) ISEfa7 ISEfa8 ISEfa11 (2) ISEfa13 ISfm1 ISRob1 (4) ISSpn10 (2) |
| p4995_2 | 42 382 | 10.5 | 34.7 | 52 | poxtA, fexB, tet(M), tet(L) | None |
rep2pRE25 rep29AUS0085p4 rep14aAUS0085p5 |
IS1062 IS1216 (7) |
| p4995_3 | 39 491 | 1.9 | 35.9 | 52 | vanA operon | None | rep2pRE25 repUS1pVEF1 repUS12pUB110 | IS1062 IS1216 (7) IS1251 IS1485 |
| p4995_4 | 11 625 | 11.9 | 32.6 | 13 | None | None | rep18ap200B | ISEfa4 |
| p4995_5 | 4 461 | 12.1 | 31.9 | 4 | None | None | Unknown (Rep_3) | None |
| p4995_6 | 2 056 | 13.4 | 37.7 | 4 | None | None | Unknown (Rep_2) | None |
n/a not applicable, n/d not determined
aBased on the sequencing depth
bCDSs, coding DNA sequences
cEstablished using ResFinder
dEstablished using VirulenceFinder
eEstablished using PlasmidFinder
fNumber of copies, if different from one, given within the brackets