TABLE 2.
BLAST-P results from ListiList and InterProScan searches
| Proteina | Domain type | Algorithm | Locationb | E value |
|---|---|---|---|---|
| Lin0142 | Winged-helix DNA binding | SUPERFAMILY | 136-196 | 1.1E−4 |
| Lmo0095 | Winged-helix DNA binding | SUPERFAMILY | 133-196 | 6.7E−6 |
| Lin0131 | Winged-helix DNA binding | SUPERFAMILY | 133-202 | 6.3E−5 |
| Lmo0085 | Winged-helix DNA binding | SUPERFAMILY | 133-202 | 2.3E−6 |
| Lin2237 | Cyclic nucleotide binding | SMART | 16-130 | 1.2 |
| Cyclic nucleotide binding | PROFILE | 36-115 | 9.361 | |
| Cyclic nucleotide binding | SUPERFAMILY | 3-126 | 1.5E−13 | |
| Winged-helix DNA binding | SUPERFAMILY | 146-224 | 9.5E−7 | |
| Lmo2166 | Cyclic nucleotide binding | PFAM | 29-122 | 0.5 |
| Cyclic nucleotide binding | SMART | 7-132 | 1.8 | |
| Cyclic nucleotide binding | PROFILE | 7-134 | 10.835 | |
| Cyclic nucleotide binding | SUPERFAMILY | 28-132 | 9.8E−13 | |
| Winged-helix DNA binding | SUPERFAMILY | 152-223 | 9.3E−6 | |
| Lin0742 | Cyclic nucleotide binding | SUPERFAMILY | 14-133 | 3.0E−10 |
| Winged-helix DNA binding | SUPERFAMILY | 142-212 | 3.0E−6 | |
| Lmo0740 | Cyclic nucleotide binding | SUPERFAMILY | 1-117 | 1.6E−10 |
| Winged-helix DNA binding | SUPERFAMILY | 142-212 | 3.4E−6 | |
| Lmo2132 | Cyclic nucleotide binding | PROFILE | 38-115 | 8.41 |
| Cyclic nucleotide binding | SUPERFAMILY | 3-126 | 2.0E−12 | |
| Winged-helix DNA binding | SUPERFAMILY | 151-224 | 2.0E−6 | |
| Lmo2744 | Cyclic nucleotide binding | PFAM | 29-129 | 0.4 |
| Cyclic nucleotide binding | PROFILE | 29-96 | 8.507 | |
| Cyclic nucleotide binding | SUPERFAMILY | 28-146 | 2.3E−14 | |
| Winged-helix DNA binding | SUPERFAMILY | 157-225 | 9.5E−11 |
a
Proteins are named according to the ListiList server (http://genolist.pasteur.fr/ListiList). The GenBank accession number for Listeria sequences is NC003212. Proteins are listed in decreasing order of identity to Lin0142.
b
Locations of amino acid sequences containing the identified domains.