TABLE 2.
Classification of M. paratuberculosis K10 ORFs compared with other mycobacterial isolates
| Isolate | Organism | No. of ORFs in classification:
|
No. of ORFs measured | % of total K10 ORFs | ||
|---|---|---|---|---|---|---|
| Divergent | Intermediate | Present | ||||
| MAA104 | M. avium subsp. avium | 210 | 355 | 2,932 | 3,497 | 80 |
| 6004 | M. avium subsp. avium | 135 | 251 | 2,765 | 3,151 | 72 |
| 6010 | M. intracellulare | 130 | 473 | 2,994 | 3,597 | 83 |
| 6006 | M. avium subsp. silvaticum | 77 | 96 | 3,038 | 3,211 | 74 |
| 6058 | M. avium subsp. silvaticum | 103 | 304 | 2,750 | 3,157 | 73 |
| 2009 | M. avium subsp. paratuberculosis | 0 | 49 | 2,715 | 2,764 | 64 |
| 4138 | M. avium subsp. paratuberculosis | 0 | 92 | 3,332 | 3,424 | 79 |
| 10006 | M. avium subsp. paratuberculosis | 0 | 458 | 2,666 | 3,124 | 72 |
| 19698 | M. avium subsp. paratuberculosis | 0 | 4 | 3,796 | 3,800 | 87 |
| 1091 | M. avium subsp. paratuberculosis | 0 | 90 | 2,720 | 2,810 | 65 |
| 6079 | M. avium subsp. paratuberculosis | 0 | 4 | 2,958 | 2,962 | 68 |
| 4090 | M. avium subsp. paratuberculosis | 0 | 398 | 2,679 | 3,077 | 71 |
| Kay | M. avium subsp. paratuberculosis | 0 | 4 | 3,056 | 3,060 | 70 |
| 1434 | M. avium subsp. paratuberculosis | 0 | 0 | 3,091 | 3,091 | 71 |
| 19420 | M. smegmatis | 380a | 931 | 521 | 1,832 | 42 |
a
M. smegmatis ORFs were classified by using a 1.5-fold cutoff for the average ratio of hybridization intensities.