Table 3.

Allele-specific extension primers (5′→3′) with 5′-tags complementary to the tags on the chip, named after the complementary tag sequence and the SNP allele

Name	Primer sequence
T2_1G	GCAGATCAATTAATACGATACCTGCG_GTGTCCTGTCCTCTGAGACG
T3_1A	GGTTCTGTTCTTCGTTGACATGAGG_GTGTCCTGTCCTCTGAGACA
T4_2A	TTAGTCTCCGACGGCAGGCTTCAAT_ATGGCAAAGTCCAGGGCACA
T5_2G	CTGTGACAGAGCCAACACGCAGTCT_ATGGCAAAGTCCAGGGCACG
T6_3G	CCTGGTGGTTGACTGATCACCATAA_CTCAGAAACTTCTTGAACCCAG
T7_3A	GCATGTATAGAACATAAGGTGTCTC_CTCAGAAACTTCTTGAACCCAA
T8_4G	GCTAGATGAAGAGCAAGCGCATGGA_TGTACGGGAGGAGGCATGG
T9_4A	TACAACCGACAGATGTATGTAAGGC_TGTACGGGAGGAGGCATGA
T10_5G	TTCAATCTGGTCTGACCTCCTTGTG_GCCCCAGGTTCCCTAGTCG
T11_5A	ACACGATGTGAATATTATCTGTGGC_GCCCCAGGTTCCCTAGTCA
T12_6T	TTGAAGTTCGCAGAATCGTATGTGT_CAAGAAAGCACTGACCTGGAT
T13_6C	AACGTCTGTTGAGCACATCCTGTAA_CAAGAAAGCACTGACCTGGAC
T16_7T	AAGCAGTCTGTCAGTCAGTGCGTGAA_AAGGAAGCACCGGGGCAAAT
T17_7C	AATGATGCTCTGCGTGATGATGTTG_AAGGAAGCACCGGGGCAAAC
T18_8G	AATACACGAAGGAGTTAGCTGATGC_GTGTCCACCACACCCCTGG
T19_8A	GCTGTTAATCATTACCGTGATAACGCC_GTGTCCACCACACCCCTGA
T20_9G	GCGGAACGGTCAGAGAGATTGATGT_TGGCGGTTGTGCGGATTCAG
T21_9A	GTTATGGTCAGTTCGAGCATAAGGC_TGGCGGTTGTGCGGATTCAA
T22_10T	TTACCTATGATTGATCGTGGTGATATCCG_GGTGGAGGGACTGGAACAT
T23_10C	GCTGTGGCATTGCAGCAGATTAAGG_GGTGGAGGGACTGGAACAC
T24_11T	TGACGTCATTGTAGGCGGAGAGCTA_GGAGACATAAGTACTTCTCCT
T25_11C	TCAATAATCAACGTAAGGCGTTCCT_GGAGACATAAGTACTTCTCCC
T26_12T	TTATCGGCTACATCGGTACTGACTC_AAAGACCAAAACATTTCAAGACAT
T27_12C	CCATTATCGCCTGGTTCATTCGTGA_AAAGACCAAAACATTTCAAGACAC
T36_13C	AAGGTACTGCAAGTGCTCGCAACAT_CTTAAGCGCCAATTTCCTTTTC
T37_13T	CTGCATTCTGCGGTAAGCACGAACT_CTTAAGCGCCAATTTCCTTTTT