TABLE 1.
Assembly properties of 10 strains isolated from Amazonian dark earth, including contig statistics, genome size, GC content, and predicted gene count
| P. vini | P. polymyxa | P. polymyxa | Fictibacillus sp. | B. agri | P. polymyxa | B. cereus | P. polymyxa | P. polymyxa | P. polymyxa | |
|---|---|---|---|---|---|---|---|---|---|---|
| Isolate | CENA-BCM001 | CENA-BCM002 | CENA-BCM003 | CENA-BCM004 | CENA-BCM005 | CENA-BCM006 | CENA-BCM007 | CENA-BCM008 | CENA-BCM009 | CENA-BCM010 |
| Library size (million of reads) |
20.9 | 23.2 | 25.7 | 24 | 26.8 | 21.6 | 19.6 | 24.4 | 26.7 | 22.3 |
| Number of contigs | 65 | 57 | 32 | 16 | 111 | 34 | 22 | 34 | 31 | 30 |
| Largest contig (bp) | 343,800 | 689,511 | 1,524,845 | 1,557,022 | 1,557,022 | 371,701 | 1,100,025 | 1,517,151 | 1,524,846 | 1,445,065 |
| Total length (bp) | 5,712,199 | 5,635,190 | 5,849,366 | 4,967,627 | 5,280,964 | 5,280,964 | 5,569,359 | 5,726,433 | 5,840,294 | 5,711,641 |
| N50 (bp) | 188,024 | 202,973 | 686,293 | 1,390,346 | 1,390,346 | 79,882 | 668,640 | 1,443,580 | 686,293 | 690,213 |
| N75 (bp) | 101,676 | 128,558 | 230,621 | 407,875 | 407,875 | 47,434 | 362,608 | 207,366 | 186,286 | 206,180 |
| GC (%) | 48.88 | 45.28 | 45.36 | 43.65 | 43.65 | 53.62 | 34.96 | 45.40 | 45.36 | 45.38 |
| Genes | 5,274 | 4,975 | 5,169 | 5,118 | 5,255 | 5,446 | 5,635 | 5,075 | 5,162 | 5,011 |
| Protein coding | 5,159 | 4,913 | 5,044 | 4,882 | 5,060 | 5,310 | 5,459 | 4,950 | 5,033 | 4,907 |
| Non-coding | 72 | 22 | 75 | 64 | 72 | 75 | 58 | 79 | 79 | 61 |
| Coverage (×) | 1082.86 | 1082.86 | 1305.91 | 1437.35 | 1471.72 | 1041.85 | 1047.66 | 1269.73 | 1359.57 | 1160.26 |
| SRA identifiers | SRX20866903 | SRX20866904 | SRX20866905 | SRX20866906 | SRX20866907 | SRX20866908 | SRX20866909 | SRX20866910 | SRX20866911 | SRX20866912 |
| GenBank identifiers | GCA_030412165.1 | GCA_030412275.1 | GCA_030412235.1 | GCA_030412265.1 | GCA_030412255.1 | GCA_030412175.1 | GCA_030412285.1 | GCA_030412135.1 | GCA_030412145.1 | GCA_030412155.1 |