Table I.
Summary of annotated cell cycle genes in Chlamydomonas
Gene model names are according to Chlamydomonas genome version 2 (http://genome.jgi-psf.org/chlre2/chlre2.home.html). na, Not applicable; Yes, successful amplification and subcloning of RT-PCR fragment; No, amplification was tried but was not successful; nd, RT-PCR was not done.
| Chlamydomonas Gene Model | Gene Name | Protein Family | Protein Subfamily | Signature Motif | Putative Function(s) | EST | RT-PCR2 |
|---|---|---|---|---|---|---|---|
| C_1630009 | CDKA1 | CDK | CDKA | PSTAIRE | G1/S, G2/M | Yes | Yes |
| C_1340024 | CDKB1 | CDK | CDKB | PSTTLRE | G2/M | Yes | Yes |
| C_1730005 | CDKC1 | CDK | CDKC/CDK9 | PITAIRE | Unknown | Yes | Yes |
| C_700049 | CDKD1 | CDK | CDKD/CDK7 | DPTLARE | CAK | Yes | Yes |
| C_1700010/11 | CDKE1 | CDK | CDKE/CDK8 | SPTAIRE | Unknown | No | Yes |
| C_270112 | CDKG1 | CDK | Novel | SDSTIRE | Unknown | Yes | Yes |
| C_1020028 | CDKG2 | CDK | Novel | AASTLRE | Unknown | Yes | No |
| C_980026 | CDKH1 | CDK | Novel | PVTSIRE | Unknown | No | Yes |
| C_740039 | CDKI1 | CDK | Novel | PDVVVRE | Unknown | Yes | nd |
| C_120118 | CYCA1 | Cyclin | A | LVEVSEEY | S/G2/M | Yes | Yes |
| C_1420018 | CYCB1 | Cyclin | B | HLKF | G2/M | Yes | Yes |
| C_460084 | CYCC1 | Cyclin | C | Transcription | No | No | |
| C_140186 | CYCD1 | Cyclin | D | G1/S | No | No | |
| C_290120 | CYCD2 | Cyclin | D | LQCDE | G1/S | Yes | Yes |
| C_1460039 | CYCD3 | Cyclin | D | LFCGE | G1/S | Yes | Yes |
| C_570097 | CYCL1 | Cyclin | L | Unknown | Yes | nd | |
| C_320095 | CYCM1 | Cyclin | Novel | Unknown | Yes | nd | |
| C_660038 | CYCU1 | Cyclin | U | Unknown | Yes | nd | |
| C_1740016 | CYCT1 | Cyclin | T | Unknown | No | nd | |
| C_1630021 | CYCAB1 | Cyclin | Novel A/B related | Unknown | No | Yes | |
| C_1840020 | MAT3 | RBR | na | G1/S, S/M | Yes | Yes | |
| C_180138 | E2F1 | E2F | E2F | G1/S, S/M | No | Yes | |
| C_570078 | DP1 | E2F | DP | G1/S, S/M | Yes | Yes | |
| C_210071 | E2FR1 | E2F | E2F? | Unknown | No | No | |
| C_980002 | WEE1 | WEE1 | na | G2/M | Yes | Yes | |
| Nonea | CKS1 | CKS1 | na | CDK subunit | Yes | Yes | |
| C_980016 | RDP1 | cdc25-like | na | HCHGSKVRGP | G2/M | No | Yes |
| C_410005 | RDP2 | cdc25-like | na | HCMFSQQRGP | G2/M | No | Yes |
| C_100077 | RDP3 | cdc25-like | na | HCHFSKVRGP | G2/M | Yes | nd |
a
Gene is located between gene models C_860084 and C_860085.