TABLE 1.
Genotype of 23 Australian ST38 genomes sequenced in house
| Strains | Source | Year of isolation | Serotype | Resistance genotype | Class1 integron and associated genes | Virulence genotype | Plasmid replicon | Virulence factors usually linked with IncF plasmids |
|---|---|---|---|---|---|---|---|---|
| EC231 | Human | 2014 | O86:H18 | aadA5, aph3, dfrA17, mphA, strA, sul1, sul2, tetA, blaCTX-M-27 | intI1△, IS26, qacEdelta1, sul1 | eitA, eitB, eitC, eitD, fecA, fyuA, irp2, kpsMT(II), traT, yeeT | IncFIB, IncFII | iss |
| EC274 | Human | 2015 | O1:H15 | aac3, blaTEM-1, catA1, tetB | IS26 | fimH, fyuA, ipaH, irp2,kpsM, kpsMT(II), papB, traT, yeeT | Col(BS512), IncFIA, IncFIB, IncFII | iss, iucB, iucC, iucD, iutA |
| EC36 | Human | 2013 | O1:H15 | aac3, aadA5, aph3, blaTEM-1, dfrA17, mphA, strA, sul1, sul2, tetA, blaCTX-M-15 | intI1△, IS26, qacEdelta1, sul1 | fimH, fyuA, ipaH,irp2, kpsMT(II), papB, yeeT | Col(BS512), Col(MP18), IncFIB, IncFII, IncI1(Gamma) | iss, iucB, iucC, iucD, iutA |
| HOS16 | Human | 2007 | O50/O2:H30 | aac3, aadA5, aph3, blaTEM-1, dfrA17, mphA, strA, sul1, sul2, blaCTX-M-14 | intI1, qacEdelta1, sul1 | eitA, eitB, eitC, eitD, fimH, fyuA, hek, ipaH, irp2, kpsMT(II), traT, yeeT | IncFII, pO111_1 | iss |
| HOS46 | Human | 2006 | O50/O2:H30 | aac3, aadA5, aph3, blaTEM-1, dfrA17, mphA, strA, sul1, sul2, blaCTX-M-14 | intI1, qacEdelta1, sul1 | eitA, eitB, eitC, eitD, fimH, fyuA, hek, ipaH, irp2, kpsMT(II), traT, yeeT | IncFII, pO111_1 | iss, sitA, sitB, sitC, sitD |
| HOS59 | Human | 2007 | O1:H15 | aac3, aadA5, aph3, blaTEM-1, dfrA17, mphA, strA, sul1, sul2, tetA, blaCTX-M-14 | intI1△, IS26, qacEdelta1, sul1 | fimH, fyuA, ipaH, irp2,papB, papF, traT, yeeT | IncB/O/K, IncFIA, IncFIB, IncFII | iss, iucB, iucC, iucD |
| HOS72 | Human | 2007 | O50/O2:H30 | aac3, aadA5, aph3, blaTEM-1, dfrA17, mphA, strA, sul1, sul2, blaCTX-M-14 | intI1, qacEdelta1, sul1 | eitA, eitB, eitC, eitD, fimH, fyuA, hek, ipaH, irp2, kpsMT(II), traT, yeeT | IncFII, pO111_1 | iss, sitA, sitB, sitC, sitD |
| CE1708 | Bird | 2012 | O7:H18 | qnrS, blaCTX-M-15 | – | fecA, fimH, ipaH, yeeT | IncY | iss, ompT |
| CE1751 | Bird | 2012 | O86:H18 | aadA5, blaTEM-1, catA1, dfrA17, mphA, sul1, tetB, tetD, blaCTX-M-14 | intI1, IS26, qacEdelta1, sul1 | fimH, fyuA, hek, ipaH, irp2, merA, traT, yeeT | Col(MG828), IncB/O/K, IncK, IncFIA, IncFIB, IncFII | iss |
| CE1760 | Bird | 2012 | O86:H18 | aadA2, aadA3, aadA8, aph3, blaSHV-1, blaTEM-1, catA1, dfrA12, mphA, strA, sul1, sul2, tetD | intI1, qacEdelta1, sul1 | eitA, eitB, eitC, eitD, fimH, fyuA, hek, ipaH, irp2, kpsMT(II), traT, yeeT | Col156, IncFIB, IncFII | iss, sitA, sitB, sitC, sitD |
| CE1860 | Bird | 2012 | O7:H15 | blaBIL, blaCMY, blaLAT_1 | – | fimH, kpsM, yeeT | IncFIB, IncI1(Gamma) | col1a-operon, iss, sitA, sitB, sitC, sitD |
| 1603H | Bird | 2012 | O86:H18 | aph3, blaTEM-1, catA1, dfrA7, strA, sul2, tetD | intI1 | eitA, eitB, eitC, eitD, fimH, fyuA, hek, ipaH, irp2, kpsMT(II), papB, traT, yeeT | Col156, IncFIB, IncFII | iss, iucB, iucC, iucD, iutA, sitA, sitB, sitC, sitD |
| 1708H | Bird | 2012 | O7:H18 | qnrS, blaCTX-M-15 | – | fecA, fimH, ipaH, yeeT | IncY | iss, ompT |
| CE1577 | Bird | 2012 | O102:H6 | aac3, aadA5, aph3, blaBIL, blaCMY, blaLAT_1, blaTEM-1, dfrA17, mphA, strA, sul1, sul2, blaCTX-M-14 | intI1, IS26, qacEdelta1, sul1 | eitA, eitB, eitC, eitD, fimH, fyuA, hek, ipaH, irp2, traT, yeeT | IncFIB, IncFII, IncFII | iroB, iroC, iroD, iroE, iroNsitA, sitB, sitC, sitD |
| CE1871 | Bird | 2012 | O102:H6 | aac3, aadA5, aph3, blaTEM-1, catA1, dfrA17, mphA, strA, sul1, sul2, tetD, blaCTX-M-14 | intI1, IS26, qacEdelta1, sul1 | fimH, fyuA, hek, ipaH, irp2, yeeT | NP | iss, sitA, sitB, sitC, sitD |
| CE1882 | Bird | 2012 | O50/O2:H30 | aac3, aadA5, aph3, blaTEM-1, dfrA17, mphA, strA, sul1, sul2, blaCTX-M-14 | intI1, IS26, qacEdelta1, sul1 | fimH, fyuA, hek, ipaH, irp2, kpsMT(II), yeeT | NP | sitA, sitB, sitC, sitD |
| MVC219 | Dog | 2011 | O7:H15 | aph3, blaTEM-1, strA, sul2 | – | fimH, kpsM, kpsMT(II), yeeT | Col(MG828), IncB, IncK, IncFIB, IncI2(Delta), IncX4 | sitA, sitB, sitC, sitD |
| MVC224 | Dog | 2011 | O1:H15 | NP | – | fimH, fyuA, ipaH, irp2, kpsM, | NP | iss, sitA, sitB, sitC, sitD |
| MVC279 | Dog | 2012 | O1:H18 | aph3, blaTEM-1, dfrA14, mphA, strA, sul2 | intI1 | fimH, fyuA, hek, ipaH, irp2, papB, yeeT | NP | iss |
| MVC4 | Dog | 2008 | O86:H18 | aac3, aadA2, aadA3, aadA8, aph3, blaTEM-1, catA1, dfrA12, mphA, strA, sul1, sul2, tetD, blaCTX-M-14 | intI1, qacEdelta1, sul1 | fimH, fyuA, hek, ipaH, irp2, yeeT | NP | iroC, iroD, iroE, iroN, iss |
| MVC815 | Dog | 2008 | O86:H18 | aac3, aadA2, aadA3, aadA8, aph3, blaTEM-1, catA1, dfrA12, mphA, strA, sul1, sul2, tetD, blaCTX-M-14 | intI1, qacEdelta1, sul1 | fimH, fyuA, hek, ipaH, irp2, yeeT | NP | iroC, iroD, iroE, iroN, iss |
| MVC82 | Dog | 2009 | O86:H18 | blaCTX-M-14 | IS26 | fimH, fyuA, hek, ipaH, irp2, yeeT | NP | iroC, iroD, iroE, iroN |
| MVC99 | Dog | 2009 | H15 | blaTEM-1, dfrA5, sul1, tetA | intI1, IS26, qacEdelta1, sul1 | estA, fimH, ipaH, ompT, traT, yeeT | IncFIB, IncFIC, IncY | estA, estB, estC, hlyF, iroB, iroC, iroD, iroE, iroN, iss, iucA, iucB, iucC, iucD, iutA, ompT, sitA, sitB, sitC, sitD |