Table 4.
List of supported file formats and variations thereof, with their converter modules and corresponding programming language
| Software application | File format | Test data source | Converter module(s) | Programming language(s) | No. of variations supported |
|---|---|---|---|---|---|
| Amira7, 61 (ThermoFisher, RRID:SCR_007353) | .am | Neuromorpho.Org | natverse28 | R | 3 |
| Arbor44 | .swc | Neuromorpho.Org | NeuronLand | C + + | 1 |
| ESWC35 | .eswc | Neuromorpho.Org | Custom | Python | 2 |
| Eutectics9 | .nts | Neuromorpho.Org | NeuronLand; Custom | C + +; Python | 4 |
| Genesis17 | .p | senselab.med.yale.edu/ModelDB/ | NeuronLand | C + + | 2 |
| HBP Morphology Viewer SWC + 13 | .swc | Neuromorpho.Org | Custom | Python | 1 |
| Imaris (Oxford Instruments, RRID:SCR_007370) | .ims | Neuromorpho.Org | NeuronLand (HDF5 Library) | C + + | 1 |
| KNOSSOS8 | .nmla | Neuromorpho.Org | Custom | Python | 1 |
| Neuroglancer (RRID:SCR_015631) | .obj .stl .ply | http://fafb-ffn1.storage.googleapis.com/data.html | skeletor59 | Python | 3 |
| Neurolucida6, 20 | .asc | Neuromorpho.Org | NeuronLand;HBP13 b | C + +; Node.js | 7 |
| Neurolucida | .dat | Neuromorpho.Org | NeuronLand; HBPb | C + +; Node.js | 3 |
| Neurolucida | .nrx | Neuromorpho.Org | NeuronLand; HBPb | C + +; Node.js | 1 |
| Neurolucida | .xml | Neuromorpho.Org | NeuronLand; HBPb | C + +; Node.js | 1 |
| NeuroML21, 22 | .nmlc | Neuromorpho.Org | NeuronLand; Custom | C + +; Python | 15 |
| NeuronJ12 | .ndf | Neuromorpho.Org | Bonfire31 b | Octave | 4 |
| NEURON15, 16 | .hoc | Neuromorpho.Org | Custom | Python | 11 |
| NeuroZoom62 | .swc | Neuromorpho.Org | NeuronLand | C + + | 2 |
| NINDS3D63 | .anat | Neuromorpho.Org | NeuronLand | C + + | 1 |
| PSICS43 (RRID: SCR_014159) | .xml | psics.org/examples.html | NeuronLand | C + + | 1 |
| PyKNOSSOS58 | .nmx | Neuromorpho.Org | Custom | Python | 1 |
| SNT TRACES10, 11 | .traces | Neuromorpho.Org | FIJI29 (SNT plugin11); Custom | Java; Python | 2 |
| TREES Toolbox14 | .mtr | Neuromorpho.Org | TREES Toolboxb | Octave | 1 |
| TREES Toolbox | .mat | Neuromorpho.Org | TREES Toolboxb | Octave | 2 |
| Visualization Toolkit64 | .vtk | natversed | Custom | Python | 2 |