Table 10.
Active site interacting residues, distance (Å) and binding affinity (Kcal/mol) of phytochemical constituents of O. grossii with 6QME.
| Interaction of EOs from O. grossii with 6QME | Residues | Types of interaction | Bond distance (Å) | Binding affinity (Kcal/mole) |
|---|---|---|---|---|
| p-cymene | ALA366 | Hydrophobic | 3.586 | − 5.2 |
| ɤ-terpinene | TYR572 | Hydrophobic | 3.625 | − 5.2 |
| TYR334 | Hydrophobic | 4.655 | ||
| TYR334 | Hydrophobic | 4.338 | ||
| ALA556 | Hydrophobic | 5.320 | ||
| Cis-sabinene | ALA366 | Hydrophobic | 4.748 | − 5.1 |
| Eucalyptol | ALA366 | Hydrophobic | 5.327 | − 5.8 |
| α-campholenal | GLY464 | Hydrogen bond | 2.564 | − 5.5 |
| ALA366 | Hydrophobic | 4.372 | ||
| Isoborneol | ILE416 | Hydrogen bond | 2.753 | − 6.1 |
| VAL463 | Hydrogen bond | 2.592 | ||
| GLY417 | Hydrogen bond | 3.561 | ||
| ALA366 | Hydrophobic | 5.239 | ||
| Borneol | ILE559 | Hydrogen Bond | 2.177 | − 6.1 |
| ALA366 | Hydrophobic | 4.791 | ||
| isopulegone | ALA556 | Hydrophobic | 3.987 | − 5.7 |
| ARG415 | Hydrophobic | 3.951 | ||
| Myrtenyl acetate | ALA366 | Hydrophobic | 4.030 | − 6.6 |
| Carvacrol | VAL418 | Hydrogen bond | 3.170 | − 5.9 |
| VAL465 | Hydrogen bond | 2.389 | ||
| ALA366 | Hydrophobic | 3.759 | ||
| Caryophyllene | ALA366 | Hydrophobic | 4.179 | − 7.5 |
| ɤ- Maaliene | ALA366 | Hydrophobic | 4.556 | − 7.4 |
| ALA366 | Hydrophobic | 4.727 | ||
| Caryophyllene oxide | ALA366 | Hydrophobic | 4.9411 | − 7.9 |
| Valencene | ALA366 | Hydrophobic | 3.831 | − 7.2 |
| co-crystallized ligand J6Q | SER508 | Hydrogen bond | 2.560 | − 8.3 |
| SER602 | Hydrogen bond | 2.152 | ||
| ALA556 | Hydrophobic | 3.779 | ||
| TYR525 | Hydrophobic | 3.769 | ||
| TYR525 | Hydrophobic | 4.388 | ||
| TYR572 | Hydrophobic | 5.408 | ||
| ALA556 | Hydrophobic | 4.137 |