Table 1.
Accuracy comparison with ONT simulated reads.Significant values are in bold.
| MAPQ_T | minimap2 | minimap2-fpga | ||||
|---|---|---|---|---|---|---|
| Intel FPGA-based system | Xilinx FPGA-based system | |||||
| No. reads with MAPQ > MAPQ_T | No. wrong mappings | No. reads with MAPQ > MAPQ_T | No. wrong mappings | No. reads with MAPQ > MAPQ_T | No. wrong mappings | |
| With base-level alignment | ||||||
| 60 | 960462 | 0 | 960470 | 0 | 960464 | 0 |
| 59 | 10210 | 1 | 10213 | 1 | 10209 | 1 |
| 38 | 20705 | 1 | 20694 | 1 | 20704 | 1 |
| 8 | 1477 | 1 | 1477 | 1 | 1477 | 1 |
| 5 | 492 | 2 | 492 | 2 | 492 | 2 |
| 4 | 492 | 1 | 492 | 1 | 492 | 1 |
| 3 | 546 | 5 | 544 | 5 | 544 | 5 |
| 2 | 568 | 2 | 570 | 2 | 570 | 2 |
| 1 | 2730 | 456 | 2730 | 456 | 2730 | 456 |
| 0 | 2198 | 1241 | 2198 | 1241 | 2198 | 1241 |
| Unmapped | 120 | 120 | 120 | |||
| Without base-level alignment | ||||||
| 60 | 970514 | 0 | 970515 | 0 | 970516 | 0 |
| 22 | 16981 | 1 | 16981 | 1 | 16979 | 1 |
| 6 | 1193 | 1 | 1194 | 1 | 1195 | 1 |
| 5 | 1176 | 3 | 1177 | 3 | 1177 | 3 |
| 4 | 1107 | 1 | 1106 | 1 | 1104 | 1 |
| 3 | 1131 | 9 | 1130 | 9 | 1130 | 8 |
| 2 | 1223 | 10 | 1222 | 10 | 1222 | 10 |
| 1 | 1525 | 22 | 1525 | 22 | 1525 | 22 |
| 0 | 5030 | 1985 | 5030 | 1985 | 5032 | 1985 |
Differences are highlighted in bold.