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. 2023 Nov 3;14:1278320. doi: 10.3389/fpls.2023.1278320

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Copyright © 2023 Azad, Dawar, Esim and Rock

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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PageMan Gene Ontology global transcriptional analysis of significantly over-represented/enriched biological process bins in response to sucrose in Col-0, pap1-D, and overall (Col-0 + pap1-D) using the Wilcoxon Rank Sum Over Representation Analysis cutoff setting = 3 (most conservative/stringent) and Benjamini-Hochberg multiple testing correction algorithm mapped to 33,000 annotated Arabidopsis genes. Genome-wide over-represented bins are aligned with Kyoto Encyclopedia of Genes and Genomes Orthology for proteome function terms highlighted in red (upregulated overall) and blue (downregulated overall), respectively. The test analyzes the median fold change within the ontological group against the median fold change of all genes not in that ontological group. The scale shown is for Z test scores which approximate standard deviations from median.