Table 1.
The nonsynonymous SNPs in the CDS region of target genes of ‘Tim1’ in common with ‘Costa Rica’ or ‘Tims-white’ parent
| Gene | Type of gene | Line | Reference | Allele (SNP) | Zygosity | Amino acid change |
|---|---|---|---|---|---|---|
| A1 | Structural | ‘Costa Rica’ | T | G | Homozygous | Lys12Thr |
| ‘Tims-white’ | – | – | – | – | ||
| ‘Tim1’ | T | G | Homozygous | Lys12Thr | ||
| sh2 | Structural | ‘Costa Rica’ | – | – | – | – |
| ‘Tims-white’ | C | T | Homozygous | Ala52Thr | ||
| ‘Tim1’ | C | T | Homozygous | Ala52Thr | ||
| Pl1 | Regulatory (Myb) | ‘Costa Rica’ | A | C | Homozygous | Gln103Pro |
| G | C | Heterozygous | Ala140Pro | |||
| G | A | Heterozygous | Arg145His | |||
| T | A | Heterozygous | Val168Glu | |||
| ‘Tims-white’ | – | – | – | – | ||
| ‘Tim1’ | A | C | Homozygous | Gln103Pro | ||
| G | C | Heterozygous | Ala140Pro | |||
| G | A | Heterozygous | Arg145His | |||
| T | A | Heterozygous | Val168Glu | |||
| R1 | Regulatory (bHLH) | ‘Costa Rica’ | C | A | Heterozygous | Pro324His |
| ‘Tims-white’ | – | – | – | – | ||
| ‘Tim1’ | C | A | Heterozygous | Pro324His | ||
| B1 | Regulatory (bHLH) | ‘Costa Rica’ | – | – | – | – |
| ‘Tims-white’ | G | T | Homozygous | Asp206Tyr | ||
| C | G | Homozygous | Phe210Leu | |||
| ‘Tim1’ | G | T | Homozygous | Asp206Tyr | ||
| C | G | Homozygous | Phe210Leu |
Dash (–) means there is no SNP present