Table 2.

Summary of SNPs and InDels in the promoter region of target genes of ‘Tim1’ in common with ‘Costa Rica’ or/and ‘Tims-white’ parent

Gene	Line	SNPs	Number of insertions and length (bp) of each insertion	Number of deletions and length (bp) of each deletion
A1	‘Costa Rica’	14	2 (1,2)	4 (2,3,1,11)
	‘Tims-white’	–	–	–
	‘Tim1’	14	2 (1,2)	4 (2,3,1,11)
Pr1	‘Costa Rica’	–
	‘Tims-white’	6 TA repeats
	‘Tim1’	8 TA repeats
sh2	‘Costa Rica’	–	–	–
	‘Tims-white’	41	–
	‘Tim1’	41	–	–
Pl1	‘Costa Rica’	20	2 (1,1)	5 (3,6,7,5,2)
	‘Tims-white’	–	–	–
	‘Tim1’	20	2 (1,1)	5 (3,6,7,5,2)
R1	‘Costa Rica’	1	–	–
	‘Tims-white’	4	2 (3, 1)	2 (1, 2)
	‘Tim1’	1 + 4	2 (3, 1)	2 (1, 2)
B1	‘Costa Rica’	1	–	–
	‘Tims-white’	–	–	–
	‘Tim1’	1	–	–