Table ED.4 ∣.
High impact NOD/LtJ-specific SNP alleles.
| SYMBOL | Variant | Location | Allele | Consequence | HGVSp |
|---|---|---|---|---|---|
| Armt1 | 10_4450853_G/GG | 10:4450853 | GG | frameshift_variant | ENSMUSP00000114073.1:p.Val201CysfsTer15 |
| 4930505A04Rik | 11_30426247_TTTTTT/TTTTTTT | 11:30426247-30426252 | TTTTTTT | frameshift_variant | ENSMUSP00000045288.7:p.Thr207AsnfsTer73 |
| Stxbp4 | 11_90604823_C/T | 11:90604823 | T | stop_gained | ENSMUSP00000103504.1:p.Trp212Ter |
| Med1 | 11_98152811_AAAAAAAAAA/AAAAAAAAA | 11:98152811-98152820 | AAAAAAAAA | frameshift_variant | ENSMUSP00000090411.5:p.Phe598SerfsTer4 |
| Ifi27l2b | 12_103451875_ACA/ACACA | 12:103451875-103451877 | ACACA | frameshift_variant | ENSMUSP00000041712.6:p.Ser169CysfsTer18 |
| Mast4 | 13_102734852_TTTTTTTTTTT/TTTTTTTTTTTTTTT | 13:102734852-102734862 | TTTTTTTTTTTTTTT | frameshift_variant | ENSMUSP00000132263.1:p.Gly1202LysfsTer20 |
| Vmn1r222 | 13_23233007_AAAAAAAA/AAAAAAA | 13:23233007-23233014 | AAAAAAA | frameshift_variant | ENSMUSP00000076365.2:p.Phe12SerfsTer3 |
| Vmn1r222 | 13_23233007_AAAAAAAA/AAAAAAA | 13:23233007-23233014 | AAAAAAA | frameshift_variant | ENSMUSP00000157644.1:p.Phe12SerfsTer3 |
| Vmn1r222 | 13_23233007_AAAAAAAA/AAAAAAA | 13:23233007-23233014 | AAAAAAA | frameshift_variant | ENSMUSP00000157499.1:p.Phe12SerfsTer3 |
| Spertl | 14_95881801_AAAAAAAAA/AAAAAAAAAA | 14:95881801-95881809 | AAAAAAAAAA | start_lost,start_retained_variant,5_prime_UTR_variant | - |
| Spertl | 14_95881801_AAAAAAAAA/AAAAAAAAAA | 14:95881801-95881809 | AAAAAAAAAA | start_lost,start_retained_variant,5_prime_UTR_variant | - |
| Mettl7a1 | 15_100328283_C/A | 15:100328283 | A | stop_gained | ENSMUSP00000155112.1:p.Tyr188Ter |
| Sdc2 | 15_32921251_GCGCGCG/GCGCG | 15:32921251-32921257 | GCGCG | frameshift_variant | ENSMUSP00000022871.5:p.Ala4ValfsTer24 |
| Adgrb1 | 15_74563913_A/G | 15:74563913 | G | splice_donor_variant | - |
| Eppk1 | 15_76103351_TG/AAGAGACTG | 15:76103351-76103352 | AAGAGACTG | frameshift_variant | ENSMUSP00000154609.1:p.Gln3111SerfsTer64 |
| Eppk1 | 15_76104896_-/AAGAGAC | 15:76104895-76104896 | AAGAGAC | frameshift_variant | ENSMUSP00000154609.1:p.Gln2596SerfsTer64 |
| Stk38 | 17_28991283_TTTTTTTTTTTTT/TTTTTTTTTTTTTT | 17:28991283-28991295 | TTTTTTTTTTTTTT | splice_donor_variant | - |
| Stk38 | 17_28991283_TTTTTTTTTTTTT/TTTTTTTTTTTTTT | 17:28991283-28991295 | TTTTTTTTTTTTTT | splice_donor_variant | - |
| Stk38 | 17_28991283_TTTTTTTTTTTTT/TTTTTTTTTTTTTT | 17:28991283-28991295 | TTTTTTTTTTTTTT | frameshift_variant | ENSMUSP00000156597.1:p.Ser108IlefsTer8 |
| Stk38 | 17_28991283_TTTTTTTTTTTTT/TTTTTTTTTTTTTT | 17:28991283-28991295 | TTTTTTTTTTTTTT | splice_donor_variant | - |
| Arid1b | 17_5321261_TTTTTTT/TTTTTTTTTTT | 17:5321261-5321267 | TTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Arid1b | 17_5321261_TTTTTTT/TTTTTTTTTTT | 17:5321261-5321267 | TTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Arid1b | 17_5321261_TTTTTTT/TTTTTTTTTTT | 17:5321261-5321267 | TTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Arid1b | 17_5321261_TTTTTTT/TTTTTTTTTTT | 17:5321261-5321267 | TTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Tmem242 | 17_5432735_G/A | 17:5432735 | A | stop_gained | ENSMUSP00000139629.1:p.Arg114Ter |
| F830016B08Rik | 18_60299849_G/A | 18:60299849 | A | start_lost | ENSMUSP00000131437.1:p.Met1? |
| As3mt | 19_46712200_TTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTT | 19:46712200-46712215 | TTTTTTTTTTTTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| As3mt | 19_46712200_TTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTT | 19:46712200-46712215 | TTTTTTTTTTTTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Morrbid | 2_128336371_C/G | 2:128336371 | G | splice_donor_variant,non_coding_transcript_variant | - |
| Morrbid | 2_128336371_C/G | 2:128336371 | G | splice_donor_variant,non_coding_transcript_variant | - |
| Cst8 | 2_148799222_G/A | 2:148799222 | A | splice_donor_variant | - |
| Pygb | 2_150808785_TTTTTTTTT/TTTTTTTTTTTTT | 2:150808785-150808793 | TTTTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Vtcn1 | 3_100892537_TTTTTTTT/TTTTTTTTTTTTTTTTTTTT | 3:100892537-100892544 | TTTTTTTTTTTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Amy2-ps1 | 3_113192372_C/T | 3:113192372 | T | splice_acceptor_variant,non_coding_transcript_variant | - |
| Cfi | 3_129850678_TTTTTTTTT/TTTTTTTTTTTTTTT | 3:129850678-129850686 | TTTTTTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Adam15 | 3_89340118_T/C | 3:89340118 | C | splice_acceptor_variant | - |
| Fcgr1 | 3_96284506_TCTCTCTCT/TCTCT | 3:96284506-96284514 | TCTCT | frameshift_variant | ENSMUSP00000029748.3:p.Glu328ArgfsTer5 |
| Zfp697 | 3_98431002_T/A | 3:98431002 | A | splice_donor_variant | - |
| Zmym4 | 4_126904386_TTTTTTTTT/TTTTTTTTTT | 4:126904386-126904394 | TTTTTTTTTT | splice_donor_variant | - |
| Zfp985 | 4_147562959_G/T | 4:147562959 | T | splice_donor_variant | - |
| Gtpbp10 | 5_5559360_-/G | 5:5559359-5559360 | G | frameshift_variant | ENSMUSP00000143003.1:p.Val36AlafsTer13 |
| Lrmp | 6_145160524_CCCCC/CCCCCCCCC | 6:145160524-145160528 | CCCCCCCCC | splice_acceptor_variant,intron_variant | - |
| Il23r | 6_67491779_A/G | 6:67491779 | G | start_lost | ENSMUSP00000113342.1:p.Met1? |
| Igkv17-121 | 6_68037077_G/T | 6:68037077 | T | stop_gained | ENSMUSP00000100116.2:p.Gly37Ter |
| Igkv17-121 | 6_68037212_C/T | 6:68037212 | T | stop_gained | ENSMUSP00000100116.2:p.Arg82Ter |
| Igkv17-121 | 6_68037297_T/A | 6:68037297 | A | stop_gained | ENSMUSP00000100116.2:p.Leu110Ter |
| Igkv17-121 | 6_68037299_C/T | 6:68037299 | T | stop_gained | ENSMUSP00000100116.2:p.Gln111Ter |
| Igkv6-25 | 6_70215666_ACGGAGA/- | 6:70215666-70215672 | - | frameshift_variant | ENSMUSP00000100184.1:p.Asp19AlafsTer3 |
| Suclg1 | 6_73275183_CTCTCTCTCTCTCTC/CTCTCTCTCTCTCTCTC | 6:73275183-73275197 | CTCTCTCTCTCTCTCTC | splice_acceptor_variant,intron_variant | - |
| Crym | 7_120195337_CCCCC/CCC | 7:120195337-120195341 | CCC | frameshift_variant | ENSMUSP00000033198.5:p.Ala220SerfsTer11 |
| Zfp629 | 7_127612556_C/T | 7:127612556 | T | stop_gained | ENSMUSP00000140505.1:p.Trp33Ter |
| 4930543N07Rik | 7_138563954_G/A | 7:138563954 | A | splice_donor_variant,non_coding_transcript_variant | - |
| Vmn1r101 | 7_20442350_TTTT/TTTTT | 7:20442350-20442353 | TTTTT | frameshift_variant | ENSMUSP00000129819.1:p.Thr82AsnfsTer5 |
| Vmn1r117 | 7_20883467_G/A | 7:20883467 | A | stop_gained | ENSMUSP00000131580.1:p.Arg219Ter |
| Tyrobp | 7_30417327_TTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTTT | 7:30417327-30417340 | TTTTTTTTTTTTTTTTTTTTTT | splice_acceptor_variant,intron_variant | - |
| Cldn18 | 9_99696053_C/T | 9:99696053 | T | splice_donor_variant | - |
| Cldn18 | 9_99696053_C/T | 9:99696053 | T | splice_donor_variant | - |