Table 2.
Loci with a Bonferroni-significant genetic correlation signal between ASD and immune-related phenotypes.
| Immune phenotype | Chr | Start (bp) | End (bp) | rg | 95% CI | p-value | Mapped genes |
|---|---|---|---|---|---|---|---|
| EOS | 1 | 200,134,006 | 201,067,952 | −0.66 | −1–−0.26 | 0.0020 | KIF14 |
| DDX59 | |||||||
| CACNA1S | |||||||
| KIF21B | |||||||
| CAMSAP2 | |||||||
| NR5A2 | |||||||
| INAVA | |||||||
| Lymph | 5 | 126,992,837 | 128,067,414 | −0.90 | −1–−0.61 | 5.1 × 10−6 | FBN2 |
| CCDC192 | |||||||
| SCL27A6 | |||||||
| SCL12A2 | |||||||
| NEU | 5 | 87,943,483 | 89,584,466 | 0.41 | 0.23–0.63 | 2.1 × 10−5 | MEF2C |
| NEU | 5 | 74,245,355 | 75,239,302 | 0.45 | 0.25–0.66 | 2.3 × 10−5 | GCNT4 |
| ANKRD31 | |||||||
| HMGCR | |||||||
| CERT1 | |||||||
| POLK | |||||||
| ANKDD1B | |||||||
| POC5 | |||||||
| CRP | 6 | 29,529,756 | 29,833,843 | 0.74 | 0.39–1 | 0.00048 | GABBR1 |
| HLA-F | |||||||
| MOG | |||||||
| HLA-G | |||||||
| OR2H2 | |||||||
| ZFP57 | |||||||
| RA | 10 | 38,566,461 | 42,392,742 | −0.84 | −1–−0.50 | 0.00021 | - |
| NEU | 10 | 129,134,739 | 129,831,969 | −0.39 | −0.66–−0.19 | 0.00020 | DOCK1 |
| NPS | |||||||
| FOXI2 | |||||||
| CLRN3 | |||||||
| PTPRE | |||||||
| YEAST4 | |||||||
| AIT | 11 | 95,327,211 | 96,150,134 | −0.44 | −0.88–−0.12 | 0.0078 |
FAM76B CEP57 MTMR2 MAML2 CCDC82 JRKL |
| RA | 11 | 95,327,211 | 96,150,134 | −0.74 | −1–−0.35 | 0.00050 | |
| MONO | 12 | 68,839,662 | 70,097,805 | 0.46 | 0.24–0.73 | 5.2 × 10−5 | CPSF6 |
| FRS2 | |||||||
| CPM | |||||||
| RAP1B | |||||||
| NUP107 | |||||||
| MDM2 | |||||||
| LYZ | |||||||
| CRP | 13 | 66,382,287 | 67,718,879 | 0.93 | 0.54–1 | 3.5 × 10−5 | PCDH9 |
| AID | 17 | 43,460,501 | 44,865,832 | 0.55 | 0.15–0.92 | 0.0079 |
WNT3 NSF ARL17B CHRH1 MAPT KANSL1 PLEKMH1 ARHGAP17 |
| EOS | 17 | 43,460,501 | 44,865,832 | −0.50 | −0.80–−0.25 | 0.0022 | |
| Lymph | 17 | 43,460,501 | 44,865,832 | −0.62 | −0.91–−0.37 | 4.1 × 10−5 |
Abbreviations: rg = genetic correlation; Chr = chromosome; CI = confidence intervals; EOS = eosinophil count; Lymph = lymphocyte count; NEU = neutrophil count; CRP = c-reactive protein; AID = autoimmune thyroid disease; RA = rheumatoid arthritis; MONO = monocyte count; italics = negative local genetic correlation.