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. 2023 Nov 22;24:440. doi: 10.1186/s12859-023-05569-6

Table 2.

Time (in s), used memory (in MiB) and number of SWAP iterations for PAM (BUILD+SWAP) calculation with k=30 using 64 threads

Number of genes and number of iterations (It.) in SWAP
Data Cells 100 It. 500 It. 4000 It. All It. Memory
Wang 71,032 488.65 40 399.41 17 349.43 18 293.96 15 10119
Garcia 100,307 1021.61 36 662.62 12 677.60 13 598.16 12 20155
Fonseca 118,144 1236.65 26 1049.29 17 1048.90 17 770.60 8 21660
Merge 289,483 14677.80 41 9908.06 16 11069.50 22 7810.15 10 169502