Table 1.
Repetitive Element identification in the An. aquasalis genome.
| Repetitive element class | Subclass | Number of elements | Length (BP) | % seq |
|---|---|---|---|---|
| Transposable elements | ||||
| SINEs | Alu | 33 | 6075 | 0.004% |
| Others SINE | 36 | 5908 | 0.004% | |
| Others LINE | 5996 | 490,975 | 0.301% | |
| LINES | LINE1 | 73 | 4118 | 0.003% |
| LINE2 | 136 | 26,889 | 0.017% | |
| L3/CR1 | 117 | 17,933 | 0.011% | |
| LTR | Others LTR | 2385 | 457,214 | 0.281% |
| ERV Class I | 6 | 383 | 0.000% | |
| ERV Class II | 24 | 1457 | 0.001% | |
| Repetitive DNA elements | 10,094 | 1,388,204 | 0.852% | |
| Unclassified | 25,547 | 2,742,549 | 1.683% | |
| Interspased repeats | 5,085,017 | 3.121% | ||
| RNA small | 63 | 4446 | 0.003% | |
| Simple repeats | 121,702 | 3,976,717 | 2.441% | |
| Low complexity repeats | 9266 | 415,557 | 0.255% | |
| Total | 44,510 | 10,231,168 | 6.279% | |