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. 2023 Oct 24;26(11):108319. doi: 10.1016/j.isci.2023.108319

Figure 3.

Figure 3

Maximum likelihood phylogenetic tree of the complete SARS-CoV-2 genomes isolated from white-tailed deer (WTD) and mule deer

Phylogeny was reconstructed using IQ-TREE under the GTR+F+I + R4 substitution model. The three high-coverage samples from Québec WTD are labeled on the tree. Branches of the phylogenetic tree are colored by the country of origin and the leaf markers are colored by the state or province of the sequence record origin. The tree is rooted to the outgroup sequence, Wuhan-Hu-1, MN908947.3 (not shown). Ultrafast bootstrap support values are shown at the node of the Québec WTD clade.