Table 4.
Top 10 up and down differentially expressed white-tailed deer genes ranked by adjusted p value
| Log2 fold change | Adjusted p value | WTD gene name | Inferred human orthologa |
|---|---|---|---|
| Up | |||
| 5.42 | 1.49x10−13 | interferon-induced transmembrane protein 1-like (LOC110149612) | IFITM1 |
| 5.50 | 1.84x10−11 | interferon alpha-inducible protein 27-like protein 2A (LOC110122860) | |
| 4.84 | 2.75x10−8 | interferon-induced transmembrane protein 1-like (LOC110149600) | IFITM1 |
| 6.34 | 9.71x10−8 | 2′-5′-oligoadenylate synthetase 2 (OAS2) | |
| 3.96 | 9.12x10−6 | pleckstrin homology domain-containing family A member 4-like (LOC110133690) | |
| 3.57 | 1.66x10−5 | hematopoietic SH2 domain containing (HSH2D) | HSH2D |
| 3.44 | 1.66x10−5 | DNA dC- > dU-editing enzyme APOBEC-3H-like (LOC110129971) | APOBEC3H |
| 6.12 | 2.70x10−5 | zonadhesin (ZAN) | ZAN |
| 4.24 | 6.32x10−5 | complement C4-A-like (LOC110139391) | C4B_2 |
| 2.95 | 7.22x10−5 | transporter 1, ATP binding cassette subfamily B member (TAP1) | TAP1 |
| Down | |||
| −25.49 | 5.00x10−7 | heterogeneous nuclear ribonucleoprotein A1-like (LOC110141849) | |
| −22.66 | 2.23x10−5 | cuticlin-2-like (LOC110149771) | |
| −22.56 | 2.31x10−5 | ornithine decarboxylase antizyme 1-like (LOC110136472) | |
| −21.26 | 9.82x10−5 | heterogeneous nuclear ribonucleoprotein A1-like (LOC110143697) | |
| −2.90 | 1.42x10−4 | testis expressed 9 (TEX9) | TEX9 |
| −2.48 | 1.43x10−4 | G protein subunit alpha 14 (GNA14) | GNA11 |
| −3.82 | 2.68x10−4 | janus kinase and microtubule interacting protein 2 (JAKMIP2) | JAKMIP2 |
| −2.82 | 5.32x10−4 | coiled-coil domain containing 181 (CCDC181) | CCDC181 |
| −2.14 | 5.68x10−4 | homer scaffold protein 2 (HOMER2) | HOMER2 |
| −3.04 | 5.68x10−4 | histamine receptor H1 (HRH1) | HRH1 |
See also Table S3. White-tailed deer differential gene expression analysis of SARS-CoV-2 positive samples compared to SARS-CoV-2 negative nasal samples with DESeq2, related to Figure 4 and Table 4, Table S4. White-tailed deer up-regulated differentially expressed genes annotation by the Database for Annotation, Visualization and Integrated Discovery (DAVID), related to Figure 4 and Table 4, Table S5. White-tailed deer up-regulated differentially expressed genes function enrichment compared to a white-tailed deer genome background by the Database for Annotation, Visualization and Integrated Discovery (DAVID), related to Figure 4 and Table 4, Table S6. White-tailed deer down-regulated differentially expressed genes annotation by the Database for Annotation, Visualization and Integrated Discovery (DAVID), related to Figure 4 and Table 4, Table S7. White-tailed deer down-regulated differentially expressed genes function enrichment compared to a white-tailed deer genome background by the Database for Annotation, Visualization and Integrated Discovery (DAVID), related to Figure 4 and Table 4.
If left blank, no human ortholog could be predicted with OrthoFinder.