Table 9. Amino Acid Interactions and Docking Scores Exhibited by Ligands 1a, 2a, 3e, 4d, 5d, and 6d against PDB 2DWBa.
compound code | amino acid involved in the interactions | type of bond | distance (Å) | HB strength | docked score (kcal/mol) |
---|---|---|---|---|---|
1a | LYS 143 | HB | 3.00 | strong | –8.80 |
GLU 260 | HB | 2.74 | strong | ||
ASP 274 | HB | 2.85 | strong | ||
2a | ARG 137 | HB | 2.13 | strong | –8.06 |
ALA 213 | halogen bond | 2.03 | |||
3e | GLU 211 | HB | 2.53 | strong | –7.71 |
ALA 213 | HB | 2.88 | strong | ||
GLY 216 | HB | 3.02 | strong | ||
4d | LYS 162 | HB | 2.20 | strong | –7.13 |
GLU 260 | HB | 3.01 | strong | ||
ASP 274 | HB | 3.22 | weak | ||
5d | LYS 162 | HB | 2.25 | strong | –7.84 |
ASP 274 | HB | 3.34 | weak | ||
6d | LYS 141 | HB | 2.37 | strong | –7.88 |
LYS 162 | HB | 2.90 | strong |
HB = hydrogen bond.