| hpi | hours post inoculation; |
| bHLH | basic/helix–loop–helix; |
| Ka/Ks | Ratios of non-synonymous to synonymous mutation frequencies; |
| ABA | abscisic acid; |
| VIGS | virus-induced gene silencing; |
| HMM | Hidden Markov Model; |
| WGD | whole-genome duplication; |
| Ka | non-synonymous mutation frequency; |
| Ks | synonymous mutation frequency; |
| NJ | neighbour-joining method; |
| TAIR | The Arabidopsis Information Resources; |
| TRV2 | tobacco rattle virus; |
| NCBI | National Center for Biotechnology Information; |
| RPKM | reads per kb per million reads. |
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