Table 1.
Members of the RcbHLH gene family as predicted in R. chinensis genome sequence.
| Gene | Accession Number 1 | Chr. 2 | Position 3 | Intron | Extron | CDS (bp) | Amino Acids | Clade |
|---|---|---|---|---|---|---|---|---|
| RcbHLH1 | RchiOBHm_Chr1g0314891 | 1 | 2,173,916 | 7 | 8 | 1296 | 432 | Ⅸ |
| RcbHLH2 | RchiOBHm_Chr1g0321521 | 1 | 9,045,543 | 1 | 2 | 708 | 236 | Ⅰb |
| RcbHLH3 | RchiOBHm_Chr1g0337011 | 1 | 28,673,606 | 2 | 3 | 1371 | 457 | Ⅱ |
| RcbHLH4 | RchiOBHm_Chr1g0348781 | 1 | 41,770,117 | 5 | 6 | 1404 | 468 | Ⅶ |
| RcbHLH5 | RchiOBHm_Chr1g0355211 | 1 | 47,903,940 | 7 | 8 | 1944 | 648 | Ⅲ(d+e+f) |
| RcbHLH6 | RchiOBHm_Chr1g0360001 | 1 | 51,822,366 | 1 | 2 | 1851 | 617 | Ⅲ(d+e+f) |
| RcbHLH7 | RchiOBHm_Chr1g0360811 | 1 | 52,697,497 | 0 | 1 | 1464 | 488 | Ⅲ(d+e+f) |
| RcbHLH8 | RchiOBHm_Chr1g0361191 | 1 | 53,198,215 | 3 | 4 | 1254 | 418 | Ⅰa |
| RcbHLH9 | RchiOBHm_Chr1g0368211 | 1 | 58,410,232 | 1 | 2 | 708 | 236 | Ⅰb |
| RcbHLH10 | RchiOBHm_Chr1g0370561 | 1 | 60,070,116 | 1 | 2 | 795 | 265 | Ⅴb |
| RcbHLH11 | RchiOBHm_Chr1g0376001 | 1 | 63,269,742 | 1 | 2 | 918 | 306 | Ⅰb |
| RcbHLH12 | RchiOBHm_Chr1g0376011 | 1 | 63,276,165 | 1 | 2 | 570 | 190 | Ⅰb |
| RcbHLH13 | RchiOBHm_Chr1g0376061 | 1 | 63,317,042 | 1 | 2 | 711 | 237 | Ⅰb |
| RcbHLH14 | RchiOBHm_Chr1g0380101 | 1 | 65,866,341 | 2 | 3 | 1098 | 366 | Ⅰa |
| RcbHLH15 | RchiOBHm_Chr2g0085911 | 2 | 1,182,817 | 6 | 7 | 1263 | 421 | Ⅺ |
| RcbHLH16 | RchiOBHm_Chr2g0091241 | 2 | 4,891,265 | 6 | 7 | 1158 | 386 | Ⅹ |
| RcbHLH17 | RchiOBHm_Chr2g0093571 | 2 | 6,833,754 | 6 | 7 | 1743 | 581 | Ⅳd |
| RcbHLH18 | RchiOBHm_Chr2g0096091 | 2 | 8,997,567 | 6 | 7 | 1293 | 431 | Ⅺ |
| RcbHLH19 | RchiOBHm_Chr2g0099391 | 2 | 11,611,832 | 4 | 5 | 954 | 318 | Ⅳb |
| RcbHLH20 | RchiOBHm_Chr2g0105811 | 2 | 17,067,752 | 0 | 1 | 753 | 251 | Ⅷ(a+b+c) |
| RcbHLH21 | RchiOBHm_Chr2g0105931 | 2 | 17,187,821 | 7 | 8 | 1128 | 376 | Ⅶ |
| RcbHLH22 | RchiOBHm_Chr2g0109611 | 2 | 20,986,271 | 3 | 4 | 1056 | 352 | Ⅳa |
| RcbHLH23 | RchiOBHm_Chr2g0109621 | 2 | 21,006,834 | 4 | 5 | 1062 | 354 | Ⅳa |
| RcbHLH24 | RchiOBHm_Chr2g0109941 | 2 | 21,287,305 | 3 | 4 | 1101 | 367 | Ⅲ(a+b+c) |
| RcbHLH25 | RchiOBHm_Chr2g0111201 | 2 | 22,786,895 | 2 | 3 | 3825 | 1275 | Orphan |
| RcbHLH26 | RchiOBHm_Chr2g0111351 | 2 | 22,988,391 | 1 | 2 | 624 | 208 | Ⅴb |
| RcbHLH27 | RchiOBHm_Chr2g0112221 | 2 | 24,091,959 | 2 | 3 | 996 | 332 | Ⅰa |
| RcbHLH28 | RchiOBHm_Chr2g0120331 | 2 | 33,053,648 | 0 | 1 | 849 | 283 | Ⅷ(a+b+c) |
| RcbHLH29 | RchiOBHm_Chr2g0126861 | 2 | 41,432,994 | 2 | 3 | 678 | 226 | Ⅰb |
| RcbHLH30 | RchiOBHm_Chr2g0139261 | 2 | 56,883,003 | 8 | 9 | 1026 | 342 | Ⅹ |
| RcbHLH31 | RchiOBHm_Chr2g0141851 | 2 | 59,398,516 | 0 | 1 | 1308 | 436 | Ⅷ(a+b+c) |
| RcbHLH32 | RchiOBHm_Chr2g0152511 | 2 | 69,890,195 | 8 | 9 | 1617 | 539 | Ⅶ |
| RcbHLH33 | RchiOBHm_Chr2g0160481 | 2 | 76,321,485 | 0 | 1 | 912 | 304 | Ⅷ(a+b+c) |
| RcbHLH34 | RchiOBHm_Chr2g0176421 | 2 | 88,244,910 | 3 | 4 | 1503 | 501 | Ⅲ(a+b+c) |
| RcbHLH35 | RchiOBHm_Chr3g0451111 | 3 | 2,350,386 | 6 | 7 | 999 | 333 | Ⅺ |
| RcbHLH36 | RchiOBHm_Chr3g0454211 | 3 | 4,346,874 | 2 | 3 | 1020 | 340 | Ⅰa |
| RcbHLH37 | RchiOBHm_Chr3g0457291 | 3 | 6,478,569 | 1 | 2 | 591 | 197 | ⅩⅥ |
| RcbHLH38 | RchiOBHm_Chr3g0458701 | 3 | 7,313,238 | 8 | 9 | 2184 | 728 | Ⅶ |
| RcbHLH39 | RchiOBHm_Chr3g0462431 | 3 | 10,114,223 | 0 | 1 | 768 | 256 | Ⅷ(a+b+c) |
| RcbHLH40 | RchiOBHm_Chr3g0465361 | 3 | 12,152,414 | 9 | 10 | 2079 | 693 | ⅩⅢ |
| RcbHLH41 | RchiOBHm_Chr3g0480621 | 3 | 26,445,394 | 5 | 6 | 1032 | 344 | Ⅸ |
| RcbHLH42 | RchiOBHm_Chr3g0480751 | 3 | 26,579,491 | 6 | 7 | 1077 | 359 | Ⅻ |
| RcbHLH43 | RchiOBHm_Chr3g0493491 | 3 | 40,682,138 | 4 | 5 | 891 | 297 | Ⅷ(a+b+c) |
| RcbHLH44 | RchiOBHm_Chr4g0390311 | 4 | 5,608,794 | 2 | 3 | 792 | 264 | Ⅳd |
| RcbHLH45 | RchiOBHm_Chr4g0392401 | 4 | 7,811,073 | 3 | 4 | 678 | 226 | Ⅳa |
| RcbHLH46 | RchiOBHm_Chr4g0399211 | 4 | 16,381,854 | 4 | 5 | 735 | 245 | Ⅲ(a+b+c) |
| RcbHLH47 | RchiOBHm_Chr4g0403251 | 4 | 22,342,021 | 5 | 6 | 465 | 155 | Ⅻ |
| RcbHLH48 | RchiOBHm_Chr4g0405961 | 4 | 26,941,409 | 5 | 6 | 501 | 167 | Ⅹ |
| RcbHLH49 | RchiOBHm_Chr4g0409001 | 4 | 32,037,594 | 5 | 6 | 1302 | 434 | Ⅸ |
| RcbHLH50 | RchiOBHm_Chr4g0412071 | 4 | 35,820,711 | 7 | 8 | 1662 | 554 | Ⅻ |
| RcbHLH51 | RchiOBHm_Chr4g0415421 | 4 | 40,124,051 | 4 | 5 | 1341 | 447 | Ⅰa |
| RcbHLH52 | RchiOBHm_Chr4g0418301 | 4 | 43,688,763 | 2 | 3 | 609 | 203 | Ⅰa |
| RcbHLH53 | RchiOBHm_Chr4g0425781 | 4 | 51,377,284 | 0 | 1 | 681 | 227 | ⅩⅥ |
| RcbHLH54 | RchiOBHm_Chr4g0429161 | 4 | 53,995,807 | 6 | 7 | 558 | 186 | Ⅻ |
| RcbHLH55 | RchiOBHm_Chr4g0434901 | 4 | 58,544,648 | 5 | 6 | 720 | 240 | Ⅻ |
| RcbHLH56 | RchiOBHm_Chr4g0435901 | 4 | 59,312,260 | 3 | 4 | 1062 | 354 | Ⅴb |
| RcbHLH57 | RchiOBHm_Chr4g0437041 | 4 | 60,257,934 | 8 | 9 | 1647 | 549 | Ⅻ |
| RcbHLH58 | RchiOBHm_Chr4g0437281 | 4 | 60,431,122 | 6 | 7 | 1008 | 336 | Ⅴa |
| RcbHLH59 | RchiOBHm_Chr4g0443741 | 4 | 64,773,328 | 7 | 8 | 1464 | 488 | Ⅲ(a+b+c) |
| RcbHLH60 | RchiOBHm_Chr4g0445091 | 4 | 65,659,106 | 5 | 6 | 825 | 275 | Ⅻ |
| RcbHLH61 | RchiOBHm_Chr4g0445691 | 4 | 66,107,770 | 6 | 7 | 1578 | 526 | Ⅹ |
| RcbHLH62 | RchiOBHm_Chr5g0004471 | 5 | 2,901,732 | 4 | 5 | 747 | 249 | Ⅳa |
| RcbHLH63 | RchiOBHm_Chr5g0004791 | 5 | 3,144,460 | 3 | 4 | 816 | 272 | Ⅲ(a+b+c) |
| RcbHLH64 | RchiOBHm_Chr5g0004831 | 5 | 3,190,712 | 7 | 8 | 1329 | 443 | Ⅹ |
| RcbHLH65 | RchiOBHm_Chr5g0008581 | 5 | 5,519,637 | 3 | 4 | 573 | 191 | Ⅰb |
| RcbHLH66 | RchiOBHm_Chr5g0008601 | 5 | 5,547,115 | 2 | 3 | 495 | 165 | Ⅰb |
| RcbHLH67 | RchiOBHm_Chr5g0010631 | 5 | 7,014,429 | 1 | 2 | 789 | 263 | Ⅴb |
| RcbHLH68 | RchiOBHm_Chr5g0013411 | 5 | 9,054,888 | 0 | 1 | 741 | 247 | ⅩⅣ |
| RcbHLH69 | RchiOBHm_Chr5g0018101 | 5 | 12,626,832 | 1 | 2 | 861 | 287 | Ⅷ(a+b+c) |
| RcbHLH70 | RchiOBHm_Chr5g0024601 | 5 | 18,681,604 | 1 | 2 | 711 | 237 | Ⅷ(a+b+c) |
| RcbHLH71 | RchiOBHm_Chr5g0025741 | 5 | 19,690,297 | 3 | 4 | 633 | 211 | Ⅲ(a+b+c) |
| RcbHLH72 | RchiOBHm_Chr5g0036871 | 5 | 31,168,132 | 6 | 7 | 1356 | 452 | Ⅹ |
| RcbHLH73 | RchiOBHm_Chr5g0037201 | 5 | 31,555,063 | 4 | 5 | 699 | 233 | Ⅳa |
| RcbHLH74 | RchiOBHm_Chr5g0048491 | 5 | 45,475,282 | 9 | 10 | 2886 | 962 | ⅩⅢ |
| RcbHLH75 | RchiOBHm_Chr5g0053301 | 5 | 55,574,872 | 1 | 2 | 792 | 264 | Ⅴb |
| RcbHLH76 | RchiOBHm_Chr5g0056871 | 5 | 60,661,176 | 3 | 4 | 987 | 329 | Ⅲ(a+b+c) |
| RcbHLH77 | RchiOBHm_Chr5g0056881 | 5 | 60,670,256 | 3 | 4 | 1101 | 367 | Ⅲ(a+b+c) |
| RcbHLH78 | RchiOBHm_Chr5g0077341 | 5 | 83,273,897 | 6 | 7 | 1314 | 438 | Ⅸ |
| RcbHLH79 | RchiOBHm_Chr6g0245181 | 6 | 1,110,505 | 5 | 6 | 1020 | 340 | Ⅳb |
| RcbHLH80 | RchiOBHm_Chr6g0246251 | 6 | 1,988,321 | 2 | 3 | 975 | 325 | Ⅳa |
| RcbHLH81 | RchiOBHm_Chr6g0253641 | 6 | 8,755,304 | 4 | 5 | 1017 | 339 | Ⅷ(a+b+c) |
| RcbHLH82 | RchiOBHm_Chr6g0254731 | 6 | 9,664,169 | 4 | 5 | 855 | 285 | Ⅹ |
| RcbHLH83 | RchiOBHm_Chr6g0257881 | 6 | 13,317,333 | 2 | 3 | 1095 | 365 | ⅩⅣ |
| RcbHLH84 | RchiOBHm_Chr6g0264701 | 6 | 20,040,197 | 7 | 8 | 1272 | 424 | Ⅻ |
| RcbHLH85 | RchiOBHm_Chr6g0268091 | 6 | 24,936,757 | 1 | 2 | 453 | 151 | Ⅲ(d+e+f) |
| RcbHLH86 | RchiOBHm_Chr6g0270891 | 6 | 28,916,670 | 2 | 3 | 732 | 244 | Ⅰb |
| RcbHLH87 | RchiOBHm_Chr6g0271001 | 6 | 29,045,898 | 2 | 3 | 2796 | 932 | Orphan |
| RcbHLH88 | RchiOBHm_Chr6g0278441 | 6 | 41,562,004 | 8 | 9 | 1653 | 551 | Ⅲ(a+b+c) |
| RcbHLH89 | RchiOBHm_Chr6g0278471 | 6 | 41,578,713 | 7 | 8 | 1890 | 630 | Ⅲ(a+b+c) |
| RcbHLH90 | RchiOBHm_Chr6g0283511 | 6 | 46,738,527 | 6 | 7 | 1650 | 550 | Ⅻ |
| RcbHLH91 | RchiOBHm_Chr6g0285491 | 6 | 48,833,566 | 7 | 8 | 1533 | 511 | Ⅶ |
| RcbHLH92 | RchiOBHm_Chr6g0288541 | 6 | 51,800,989 | 10 | 11 | 2190 | 730 | ⅩⅢ |
| RcbHLH93 | RchiOBHm_Chr6g0288981 | 6 | 52,186,951 | 1 | 2 | 1434 | 478 | Ⅲ(d+e+f) |
| RcbHLH94 | RchiOBHm_Chr6g0289601 | 6 | 52,628,904 | 5 | 6 | 882 | 294 | Ⅺ |
| RcbHLH95 | RchiOBHm_Chr6g0291161 | 6 | 54,342,571 | 5 | 6 | 2109 | 703 | Ⅲ(d+e+f) |
| RcbHLH96 | RchiOBHm_Chr6g0301601 | 6 | 61,956,169 | 6 | 7 | 1434 | 478 | Ⅹ |
| RcbHLH97 | RchiOBHm_Chr6g0308101 | 6 | 66,214,825 | 0 | 1 | 750 | 250 | Ⅷ(a+b+c) |
| RcbHLH98 | RchiOBHm_Chr6g0308241 | 6 | 66,322,449 | 1 | 2 | 633 | 211 | ⅩⅣ |
| RcbHLH99 | RchiOBHm_Chr6g0308251 | 6 | 66,326,408 | 5 | 6 | 1002 | 334 | Ⅶ |
| RcbHLH100 | RchiOBHm_Chr6g0309431 | 6 | 67,137,708 | 3 | 4 | 1137 | 379 | Ⅷ(a+b+c) |
| RcbHLH101 | RchiOBHm_Chr6g0310101 | 6 | 67,513,823 | 8 | 9 | 1293 | 431 | Ⅻ |
| RcbHLH102 | RchiOBHm_Chr7g0180121 | 7 | 2,158,763 | 5 | 6 | 816 | 272 | Ⅻ |
| RcbHLH103 | RchiOBHm_Chr7g0181001 | 7 | 2,715,710 | 4 | 5 | 750 | 250 | Ⅳb |
| RcbHLH104 | RchiOBHm_Chr7g0182341 | 7 | 3,630,748 | 4 | 5 | 1092 | 364 | Ⅶ |
| RcbHLH105 | RchiOBHm_Chr7g0183781 | 7 | 4,545,994 | 11 | 12 | 1701 | 567 | Ⅴa |
| RcbHLH106 | RchiOBHm_Chr7g0185551 | 7 | 5,672,706 | 5 | 6 | 855 | 285 | Ⅻ |
| RcbHLH107 | RchiOBHm_Chr7g0186541 | 7 | 6,438,416 | 9 | 10 | 2337 | 779 | ⅩⅢ |
| RcbHLH108 | RchiOBHm_Chr7g0187141 | 7 | 6,933,397 | 1 | 2 | 1407 | 469 | Ⅲ(d+e+f) |
| RcbHLH109 | RchiOBHm_Chr7g0187261 | 7 | 7,027,943 | 1 | 2 | 1350 | 450 | Ⅲ(d+e+f) |
| RcbHLH110 | RchiOBHm_Chr7g0188921 | 7 | 8,298,561 | 3 | 4 | 1593 | 531 | Ⅲ(a+b+c) |
| RcbHLH111 | RchiOBHm_Chr7g0189021 | 7 | 8,415,832 | 7 | 8 | 1041 | 347 | Ⅻ |
| RcbHLH112 | RchiOBHm_Chr7g0193761 | 7 | 12,029,125 | 2 | 3 | 573 | 191 | Ⅰb |
| RcbHLH113 | RchiOBHm_Chr7g0197531 | 7 | 15,472,708 | 7 | 8 | 1920 | 640 | Ⅲ(d+e+f) |
| RcbHLH114 | RchiOBHm_Chr7g0199961 | 7 | 17,925,106 | 1 | 2 | 765 | 255 | Ⅰb |
| RcbHLH115 | RchiOBHm_Chr7g0209751 | 7 | 27,192,104 | 0 | 1 | 2082 | 694 | Ⅲ(d+e+f) |
| RcbHLH116 | RchiOBHm_Chr7g0210101 | 7 | 27,730,558 | 2 | 3 | 963 | 321 | Ⅰa |
| RcbHLH117 | RchiOBHm_Chr7g0212241 | 7 | 29,570,891 | 1 | 2 | 1392 | 464 | Ⅲ(d+e+f) |
| RcbHLH118 | RchiOBHm_Chr7g0227911 | 7 | 51,177,367 | 4 | 5 | 672 | 224 | Ⅸ |
| RcbHLH119 | RchiOBHm_Chr7g0233161 | 7 | 57,581,440 | 3 | 4 | 1068 | 356 | Ⅲ(a+b+c) |
| RcbHLH120 | RchiOBHm_Chr7g0236841 | 7 | 61,576,445 | 1 | 2 | 645 | 215 | Ⅴb |
| RcbHLH121 | RchiOBHm_Chr7g0237511 | 7 | 62,551,696 | 1 | 2 | 1083 | 361 | ⅩⅢ |
1 Available at https://lipm-browsers.toulouse.inra.fr/pub/RchiOBHm-V2/ (accessed on 5 July 2022 ). 2 Chromosome. 3 Starting position (b).