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. 2023 Nov 11;24(22):16202. doi: 10.3390/ijms242216202

Figure 3.

Figure 3

Evidence supporting the taxonomy and phylogeny of vB_VhaS_R21Y. (A) Protein-sharing network indicating evolutionary affinity among vB_VhaS_R21Y and its related phages sharing pairwise similarity scores of >1. Each node represents a phage genome and is colored according to its host taxonomy. Edges connecting pairwise phages from the same viral cluster determined by vConTACT2 are displayed. Thicker edges indicate a strong connection between the two phages. The valid names of existing phage genera are displayed. (B) Pairwise intergenomic distances/similarities among viral genomes for 20 phages as per the Virus Intergenomic Distance Calculator. (C) GBDP tree based on complete or partial genomes of compared phages using the web tool, VICTOR. (D) Neighbor-joining tree (1000 bootstraps) of vB_VhaS_R21Y and similar phages based on the amino acid sequences of major capsid protein as per MEGA 7. The asterisk indicates that the protein sequence has been manually annotated as the major capsid protein. (E) Neighbor-joining tree (1000 bootstraps) of vB_VhaS_R21Y and similar phages based on amino acid sequences of the terminase large subunit as per MEGA 7.