Table 4.
Gene annotations for Set 1, Set 2, and Set 3 obtained by using the differentially present genes approach. Set 1 contains the genes that are present in bacteria with multipartite genomes (a large majority or most or all) but are absent in their closest relatives with single-chromosome genomes; Set 2 contains the genes that are absent in bacteria with multipartite genomes but are present in their closest relatives with single-chromosome genomes (a large majority or most or all); and Set 3 contains the genes that do not belong to Set 1 and Set 2.
| Set 1 | Set 2 | Set 3 |
|---|---|---|
| cell division protein ftsz (D) | d-isomer-specific 2-hydroxyacid dehydrogenase, nad-binding protein (CH) | chloramphenicol acetyltransferase (V) |
| cobalamin biosynthesis protein cbig (S) | glycine dehydrogenase subunit 2 (E) | dna protecting protein dpra (LU) |
| diguanylate cyclase/phosphodiesterase (T) |
hypothetical protein cp97_01065 (-) | flagellar protein flgj (MNO) |
| extensin family protein (S) | hypothetical protein turpa_2028 (-) | gtp-binding proten hflx (S) |
| gcra cell-cycle regulator (-) | outer membrane chaperone skp family protein (M) | lipoprotein, putative (S) |
| Invasion-associated locus b family protein (-) | preprotein translocase, secg subunit (U) | stage ii sporulation protein e (T) |
| mgs domain protein (F) | protein of unknown function duf389 (S) | transcriptional regulator, crp/fnr family (K) |
| ompa/motb domain protein (M) | single-stranded dna-binding protein-1 (L) | transcriptional regulator, merr family (K) |
| protein of unknown function duf1127 (S) | tpr repeat domain protein (S) | transcriptional regulator, tetr family (K) |
| putative metal-dependent protease (L) | twin-arginine translocation pathway signal domain protein (S) | hypothetical protein cp97_01545 (-) |
| HPS_22 (-) | HPS_105 (-) | hypothetical protein cp97_01880 (-) |
| HPS_107 (-) | hypothetical protein cp97_06070 (-) |