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. 2023 Nov 24;14:7711. doi: 10.1038/s41467-023-43019-2

Fig. 2. Cell embedding and clustering benchmark in controlled settings derived from cell lines data.

Fig. 2

A Schematic representation of the benchmarking process; B The first three columns of this panel are devoted to silhouette scores, Adjusted Rand Indices (ARIs), and purity scores for the different methods on six controlled settings derived from cell lines data. The following six columns provide UMAP visualizations for the six benchmarked methods (Mowgli, MOFA+, NMF, Seurat v4, Multigrate, Cobolt) on six controlled settings derived from cell lines data. Different colors in these UMAP plots correspond to the three groups of cells imposed in the dataset.