Table 1.
WGS-predicted phenotype based on plasmid-mediated ARGs of P. gergoviae genomes.
| Strain 1 | Antimicrobial Agent 2,3 | Pattern 4 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| COL | AMP | AMC | PTZ | CFO | CAZ | CPM | ATM | MPM | CIP | STP | GEN | AMI | TET | MIN | TGC | SXT | CHL | FOS | ||
| 1613625 * | S | R | R | R | R | R | R | R | R | S | S | S | S | S | S | S | S | S | S | MDR |
| 2021DK-00143 * | S | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | R | S | MDR |
| 2021DK-00148 * | S | R | R | R | R | R | R | R | R | R | S | S | S | S | S | S | R | R | S | MDR |
| 2021DK-00170 * | R | R | R | R | R | R | R | R | R | S | R | R | S | R | S | S | R | R | S | MDR |
| 2022DK-00148 * | R | R | R | R | R | R | R | R | R | S | R | S | S | S | S | S | S | R | S | MDR |
| 2022DK-00154 * | S | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | R | S | MDR |
| 2022DK-00156 * | R | R | R | R | R | R | R | R | R | S | R | R | S | S | S | S | R | R | S | MDR |
| 2022DK-00159 * | S | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | R | S | MDR |
| 2022KU-00264 * | R | R | R | R | R | R | R | R | R | R | S | R | S | S | S | S | S | S | S | MDR |
| 2023BM-00012 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| 2023BM-00013 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| 214632 * | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 40874 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| AK5227 * | S | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | R | S | S | MDR |
| ATCC 33028 * | S | R | S | S | S | S | S | S | S | S | R | R | S | R | S | S | R | R | S | MDR |
| BWH-P-GER-1 * | S | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | R | S | MDR |
| BWH-P-GER-6 * | S | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | R | S | MDR |
| C3 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| C7B * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| CCBH27438 * | S | R | R | R | R | R | R | R | R | R | R | S | R | S | S | S | S | S | S | MDR |
| DL84A27 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| DS82E24 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| DTU-2020-1001845-1 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| DTU-2021-1003198-1 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| ECO77-3 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| FDAARGOS-386 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| JB83E35 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| JP84E9 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| JS81F13 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| MGH173 * | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | R | R | S | MDR |
| MGH183 * | R | R | R | R | R | R | R | R | R | R | R | S | R | R | S | S | R | S | S | MDR |
| Microbial * | R | R | R | R | R | R | R | R | R | S | R | S | R | R | S | S | R | R | S | MDR |
| SF84F43 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| SN86A38 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| SS84A28 * | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| PG1351 ^ | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| FB2 $ | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| H11 $ | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | S | – |
| 1951017-11 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1951017-12 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1951017-13 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1951017-14 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1951017-15 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1952417-11 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1952417-12 # | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | S | R | S | S | MDR |
| 1952417-13 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1952417-14 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
| 1952417-15 # | R | R | R | R | R | R | R | R | R | R | R | R | R | R | S | S | R | S | S | MDR |
1 *, strains from humans; ^, strain from dog; $, strains from foods; #, strains from the environment. 2 S in green color, susceptible; R in red color, resistant. 3 Antimicrobial categories as follows: polymyxins (COL, colistin), penicillins (AMP, ampicillin), penicillins + β-lactamase inhibitors (AMC, amoxicillin-clavulanic acid), antipseudomal penicillins + β-lactamase inhibitors (PTZ, piperacillin-tazobactam), cephamycins (CFO, cefoxitin), extended-spectrum cephalosporins; 3rd and 4th generation cephalosporins (CAZ, ceftazidime; CPM, cefepime); monobactams (ATM, aztreonam); carbapenems (MPM, meropenem); fluoroquinolones (CIP, ciprofloxacin); aminoglycosides (STP, streptomycin; GEN, gentamicin; AMI, amikacin); tetracyclines (TET, tetracycline; MIN, minocycline); glycylcyclines (TGC, tigecycline); folate pathway antagonists (SXT, trimethoprim-sulfamethoxazole); phenicols (CHL, chloramphenicol); and phosphonic acids (FOS, fosfomycin). 4 Classification as MDR according to Magiorakos et al. [9]; MDR, multidrug-resistant; –, non-MDR.