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. 2023 Nov 24;14:150. doi: 10.1186/s40104-023-00944-y

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 8 — Transcriptional profiling analysis of multiple organs and tissues in geese. A Expression level distribution of core, softcore, shell, and cloud genes in the reference genome. B PCA analysis of gene expression levels in all organs and tissues. C Distribution of the tissue-specificity index (TAU) of gene expression in various organs and tissues. D GO enrichment analysis results of tissue-specific genes. E Proportions of tissue-specific genes classified into core, softcore, shell, and cloud genes based on the classification information of genes. F Gene frequency distribution of tissue-specific genes in the population of geese based on PAV information. G Waterfall plot of the variation burden of differentially expressed genes in the ovary during egg-production process in the population of geese. LRP1: Low-density lipoprotein receptor-related protein 1, NFYC: Nuclear transcription factor Y subunit gamma, CD11B: Cyclin-dependent kinase 11B, SCN2B: Sodium channel subunit beta-2, PRP8: Pre-mRNA-processing-splicing factor 8, SSNA1: Sjoegren syndrome nuclear autoantigen 1, HLF: Hepatic leukemia factor, MAML1: Mastermind-like protein 1, HDAC8: Histone deacetylase 8, DLG3: Disks large homolog 3, DIAP2: Protein diaphanous homolog 2, MEF2A: Myocyte-specific enhancer factor 2A homolog, GRIP2: Glutamate receptor-interacting protein 2, GPC1: Glypican-1, EMSY: BRCA2-interacting transcriptional repressor EMSY, KATL2: Katanin p60 ATPase-containing subunit A-like 2, E2F5: Transcription factor E2F5, XPO5: Exportin-5, SAR1A: GTP-binding protein SAR1a, CCAR1: Cell division cycle and apoptosis regulator protein 1, CDKL2: Cyclin-dependent kinase-like 2, RBM33: RNA-binding protein 33, AT1B1: Sodium/potassium-transporting ATPase subunit beta-1, CAPR1: Caprin-1, SVIP: Small VCP/p97-interacting protein, TRAM2: Translocating chain-associated membrane protein 2, RTJK: RNA-directed DNA polymerase from mobile element jockey, MGAP: MAX gene-associated protein, and DPOG2: DNA polymerase subunit gamma-2, mitochondrial