Table 2.
Putative recombination positions and precision for chromosome 1 in offspring ID-256 and for chromosome 21 in ID-258 for the 10%- and 1%-downsampled datasets. Also given are the parental origin of the chromosome and the analysis algorithm (PD: proportional difference; CCS: cumulative continuity score)
| Offspring | Chromosome | Origin | Algorithm | Scaffold & Orientation | Chromosomal position (bp) | Precision (bp) |
|---|---|---|---|---|---|---|
| 10% downsampled dataset | ||||||
| ID-256 | 1 | Paternal | PD | Contig4 + | 30,654,646 | 7692 |
| ID-256 | 1 | Paternal | PD | Contig108 - | 117,671,695 | 2326 |
| ID-256 | 1 | Maternal | PD | Contig4 + | 36,949,357 | 25,000 |
| ID-256 | 1 | Paternal | CCS | Contig4 + | 1,675,140 | 1961 |
| ID-256 | 1 | Paternal | CCS | Contig4 + | 30,636,962 | 7692 |
| ID-256 | 1 | Paternal | CCS | Contig108 - | 117,758,436 | 3704 |
| ID-256 | 1 | Maternal | CCS | Contig4 + | 1,517,974 | 2439 |
| ID-256 | 1 | Maternal | CCS | Contig4 + | 36,941,588 | 25,000 |
| ID-258 | 21 | Maternal | PD | Contig21 - | 3,063,137 | 2941 |
| ID-258 | 21 | Maternal | CCS | Contig21 - | 2,888,890 | 5882 |
| 1% downsampled dataset | ||||||
| ID-256 | 1 | Paternal | CCS | Contig4 + | 30,701,609 | 100,000 |
| ID-256 | 1 | Paternal | CCS | Contig108 - | 117,668,229 | 20,000 |
| ID-256 | 1 | Maternal | CCS | Contig4 + | 37,001,284 | NAa |
| ID-258 | 21 | Maternal | CCS | Contig21 - | 3,051,932 | 50,000 |
aPrecision cannot be calculated because there are no informative SNPs in the interval used for this calculation (division with zero)