Table 4.
Phosphosites identified in cluster 4 on Figure 4, defined by the pattern of major allele frequencies (AF) across four varietal groups – Japonica (jap), Indica (ind), admixed (admx) and aus. Annotations are sourced by merging any data held in MSU or RAP-DB databases for the corresponding gene. Cluster 4 is mostly characterised by high AF in Japonica, Indica, admixed, but low in Aus.
| Protein accession | FLR cat | PTM pos | PTM res | SAAV | jap major AF | ind major AF | admx major AF | aus major AF | Annotation(s) |
|---|---|---|---|---|---|---|---|---|---|
| LOC_Os01g42010.1 | Bronze | 7 | S | S->N | 0.732 | 0.925 | 0.728 | 0.184 | Similar to cDNA clone:001 -043-A08, full insert sequence.:PF03661.6;UPF0121 ;Family_7 |
| LOC_Os06g36940.1 | Gold | 238 | S | S->Y | 0.835 | 0.820 | 0.689 | 0.035 | Conserved hypothetical protein.:_238 |
| LOC_Os05g22920.1 | Gold | 53 | S | S->A | 0.993 | 0.829 | 0.854 | 0.234 | Hypothetical conserved gene.:PF06862.5;DUF1253;Family_53 |
| LOC_Os01g12530.1 | Silver | 581 | S | S->G | 0.857 | 0.925 | 0.806 | 0.055 | PF08590.3;DUF1771 ;Domain_581 |
| LOC_Os03g15940.1 | Bronze | 196 | S | S->F | 0.961 | 0.978 | 0.854 | 0.224 | Zinc finger, LIM-type domain containing protein.:PF00412.15;LIM;Domain_196 |
| LOC_Os04g51120.1 | Silver | 220 | S | S->G | 0.975 | 0.736 | 0.738 | 0.179 | Similar to ENTH1 protein (Fragment).:PF01417.13;ENTH;Domain_220 |
| LOC_Os08g06360.1 | Bronze | 69 | S | S->G | 0.905 | 0.941 | 0.816 | 0.055 | Tho complex subunit 7 domain containing protein.:PF05615.6;THOC7;Family_69 |
| LOC_Os05g43670.1 | Bronze | 365 | S | S->G | 0.997 | 0.959 | 0.874 | 0.060 | IQ motif, EF-hand binding site domain containing protein.:PF02179.9;BAG;Family_365 |