Reviewer name and names of any other individual's who aided in reviewer |
Kushal Suryamohan |
Do you understand and agree to our policy of having open and named reviews, and having your review included with the published papers. (If no, please inform the editor that you cannot review this manuscript.) |
Yes |
Is the language of sufficient quality? |
Yes |
Please add additional comments on language quality to clarify if needed
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Are all data available and do they match the descriptions in the paper? |
No |
Additional Comments |
I was not able to access all the data - but I assume its available under the accession they provide in the paper - also will be nice to have the gene annotation table as part of a supplementary section in the manuscript |
Are the data and metadata consistent with relevant minimum information or reporting standards? See GigaDB checklists for examples <a href="http://gigadb.org/site/guide" target="_blank">http://gigadb.org/site/guide</a> |
Yes |
Additional Comments |
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Is the data acquisition clear, complete and methodologically sound? |
No |
Additional Comments |
A generic protocol is referenced - I suggest the data collected specific to this snake be stated in the MS |
Is there sufficient detail in the methods and data-processing steps to allow reproduction? |
Yes |
Additional Comments |
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Is there sufficient data validation and statistical analyses of data quality? |
Not my area of expertise |
Additional Comments |
There is no statistical analysis applicable in the work |
Is the validation suitable for this type of data? |
No |
Additional Comments |
not sure this is applicable |
Is there sufficient information for others to reuse this dataset or integrate it with other data? |
No |
Additional Comments |
not clear - may be it is - urge the authors to make the gene annotation available as part of the manuscript |
Any Additional Overall Comments to the Author |
The authors report the assembly for Naja atra. The report a genome of 1.34Gb coding for 26,432 functional genes. The work is suitable for the journal. Some suggestions to improve the work to make it more than just a genome announcement paper are noted below.
1. Authors point to a protocols paper to figure out the data generate – will be useful for them to state what data type and much was collected
2. Suggest adding numbers that indicate how many scaffolds greater than 5 or 10Mb is present in the assembly and does that number roughly correspond to the number of chromosomes seen elapids
3. They say they identified 26,432 functional genes – is all of these full length protein coding genes ? Is there an annotation for toxin genes ? Can they state how many toxins they find in the genome given it’s a medically important snake as stated in their introduction.
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Recommendation |
Minor Revision |