Table 3.

Summary of the TEs in our N. atra genome.

	Repbase TEs		TE proteins		De novo		Combined TEs
Type	Length (bp)	% in genome	Length (bp)	% in genome	Length (bp)	% in genome	Length (bp)	% in genome
DNA	44,907,141	2.57	3,638,477	0.20	41,761,899	2.39	81,259,555	4.66
LINE	170,663,721	9.79	140,023,530	8.03	581,624,764	33.36	619,156,475	35.51
SINE	25,759,131	1.47	0	0	8,061,060	0.46	32,226,226	1.84
LTR	22,468,876	1.28	30,088,483	1.72	149,994,747	8.60	159,624,403	9.15
Other	23,680	0.001	0	0	0	0	23,680	0.001
Unknown	0	0	0	0	5,653,213	0.32	5,653,213	0.32
Total	251,569,212	14.43	173,669,200	9.96	722,435,038	41.44	752,340,302	43.15