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. Author manuscript; available in PMC: 2023 Nov 28.
Published in final edited form as: Neurobiol Dis. 2022 Dec 14;176:105964. doi: 10.1016/j.nbd.2022.105964

Table II:

Top biological functions of RNAseq dataset from the brain of LD mice in comparison to wild type ordered by z-score (z-score >2 was defined as the threshold of significant activation). The p-value and the genes involved in the corresponding biological functions are indicated.

Diseases and Biological functions z-score p-value Genes from the data set
Cell movement of granulocytes 3.51 1.33 E-16 C3, CCL2, CCL5, CD74, CHIL4, CXCL6, CXCL10, IL1RL1, LCN2, MMP12, TIMP1
Homeostasis of leukocytes 3.42 4.42 E-16 ARG1, C3, CCL2, CCL5, CD74, CXCL6, CXCL10, IL1RL1, LCN2
Cellular infiltration 3.27 1.24 E-16 ARG1, C3, CCL2, CCL5, CHIL4, CXCL10, IL1RL1, LCN2, MMP12, TIMP1
Inflammatory response 2.89 1.25 E-14 C3, CCL2, CCL5, CD74, CHIL4, CLEC7A, CXCL6, CXCL10, FCGR3A, HCAR2, IL1RL1, LCN2, LYZ, RENTLA
Phagocytosis 2.81 5.37 E-11 C3, CCL2, CCL5, CLEC7A, CXCL10, FCGR3A, IL1RL1, LCN2
Immune response of cells 2.78 1.05 E-19 ARG1, C3, CCL2, CCL5, CD74, CLEC7A, CXCL10, FCGR3A, IL1RL1, ITGAX, LCN2