Table 4.
Gene start signals, intergenic regions, and gene end signals established in newly discovered orthoparamyxoviruses. Individual sequences and general sequences are shown, conserved positions are annotated in bold. No independent gene start signal, intergenic region and gene end signal could be established for the hypothetical protein X2 of NinExV (indicated by ...).
| Gene end | Intergenic region | Gene start | |
|---|---|---|---|
| NinaV | |||
| N | AGGAGCAAGG | ||
| N/P | CTAAGAAAAA | CTT | AGGAGGAAGG |
| P/M | TTATAAAAAA | CTT | AGGAGGAAGG |
| M/F | ATAAGAAAAA | CTT | AGGGCGACAG |
| F/SH | TTAGAAAAAA | CTT | AGGACTAAGG |
| SH/TM | CTAGAAAAAA | CTT | AGGGCGAATG |
| TM/G | CTAAGAAAAA | CTT | AGGGCGAAAG |
| G/L | TTAAGAAAAA | CTT | AGGGGTAATG |
| L | TTAAGAAAAA | ||
| General sequence | HTADRAAAAA | CTT | AGGRSBAMDG |
| DenoV | |||
| N | AGGACTAAGG | ||
| N/P | TTAAGAAAAA | CTT | AGGATTAACG |
| P/M | TTAAGAAAAA | CTT | AGGAGTAAAG |
| M/F | ATATAAAAAA | CTT | AGGAGTCAAG |
| F/SH | TCATAAAAAA | CTT | AGGATGAACG |
| SH/TM | TTAGAAAAAA | CTT | AGGACAAATG |
| TM/G | CTAAGAAAAA | CTT | AGGACAAATG |
| G/L | TTAAGAAAAA | CTT | AGGAGCAATG |
| L | TTAAGAAAAA | ||
| General sequence | HYADRAAAAA | CTT | AGGABNMANG |
| NinYsV | |||
| N | AGGAGCAAAG | ||
| N/P | TTAAGAAAAA | CTT | AGGAACAAGG |
| P/M | TTATGAAAAA | CTT | AGGAATAAGG |
| M/F | CTAAGAAAAA | CTT | AGGTATAAGG |
| F/SH | ATACAAAAAA | CTT | AGGGTAAAAG |
| SH/TM | TTAAGAAAAA | CTT | AGGGCAAATG |
| TM/G | CTAAGAAAAA | CTT | AGGAGTAAAG |
| G/L | TTAAGAAAAA | CTT | AGGATCAAAG |
| L | TTAAGAAAAA | ||
| General sequence | HTAHRAAAAA | CTT | AGGDNHAADG |
| PipaV | |||
| N | AGGATGCAAG | ||
| N/P | TTAAGAAAAA | CTT | AGGATGCAAG |
| P/M | TTAAGAAAAA | CTT | AGGAGCAACG |
| M/F | GTAATAAAAA | CTT | AGGATCCAAG |
| F/TM | CTATAAAAAA | CAT | AGGATCCAAG |
| TM/G | TTAAGAAAAA | CTT | AGGAGACAAG |
| G/L | TTAAGAAAAA | CTT | AGGAGATAAC |
| L | TTAAGAAAAA | ||
| General sequence | BTAWDAAAAA | CWT | AGGAKVHAMS |
| PlecoV | |||
| N | AGGAATCAAG | ||
| N/P | TTAAGAAAAA | CTT | AGGATGAAAG |
| P/M | TTATAAAAAA | CTT | AGGGTTCAAG |
| M/F | TCAAGAAAAA | CAT | AGGGTTAATG |
| F/TM | TTAAGAAAAA | CTT | AGGATGAAAG |
| TM/G | TTAAGAAAAA | CTT | AGGATTCACG |
| G/L | TTAAGAAAAA | CTT | AGGATTCAAG |
| L | TTAAGAAAAA | ||
| General sequence | TYAWRAAAAA | CWT | AGGRWKMAHG |
| NinExV | |||
| N | AGGATCCAAG | ||
| N/P | TTAAGAAAAA | CTT | AGGATACAAG |
| P/M | TTAAGAAAAA | CTT | AGGATACAGG |
| M/X1 | TTAAGAAAAA | CTT | AGGATAAAAG |
| X1/X2 | TTAAAGAAAA | CTT | AGGATCCAGG |
| X2/F | … | … | … |
| F/G | TTAAGAAAAA | CTT | AGGATCCAAG |
| G/L | TTAAGAAAAA | CTT | AGGACACAAG |
| L | TTAAGAAAAA | ||
| General sequence | TTAARRAAAA | CTT | AGGAYMMARG |