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. 2023 Nov 17;4(4):102709. doi: 10.1016/j.xpro.2023.102709
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Human CD13-BUV737 (clone L138, 1:40) BD Biosciences Cat# 749265
Human CD45-PerCp-Cy5.5 (clone HI30, 1:25) Thermo Fisher Scientific Cat# 45-0459-42
Human GPC2 (clone D3, PE labeled, 1:200) Dr. Dimiter S. Dimitrov (University of Pittsburgh) N/A
Human GD2-BV510 (clone 14g2a, 1:20) BioLegend Cat# 357316
Human NCAM-BV605 (clone 5.1H11, 1:100) BioLegend Cat# 362538
Human L1CAM-BV421 (clone 5G3, 1:200) BD Biosciences Cat# 565732
Human L1CAM-PE (clone 5G3, 1:200) BD Biosciences Cat# 564193
Human ALK (clone 48, APC labeled, 1:500) Mark Vigny N/A
Human B7-H3-PE-Cy7 (clone MIH42, 1:40) BioLegend Cat# 351008

Biological samples

Human neuroblastoma-infiltrated bone marrow samples Stanford Pediatrics Bass Center Tissue Bank (IRB: #45458 and #56619) N/A
Human bone marrow samples from B-ALL patients (uninvolved tumor-free at remission) Stanford Pediatrics Bass Center Tissue Bank (IRB: #45458 and #56619) N/A

Chemicals, peptides, and recombinant proteins

Abcam PE Conjugation Kit Lightning-Link Abcam Cat# ab102918
Abcam APC Conjugation Kit Lightning-Link Abcam Cat# ab201807
BD Quantibrite PE beads BD Biosciences Cat# 340495
BD custom quantitation beads in APC BD Biosciences Custom 626425
BD custom quantitation beads in PE-Cy7 BD Biosciences Custom 625639
BD custom quantitation beads in BV421 BD Biosciences Custom 625508
BD custom quantitation beads in BV510 BD Biosciences Custom 625594
BD custom quantitation beads in BV605 BD Biosciences Custom 625638
UltraComp eBeads Plus compensation beads Thermo Fisher Scientific Cat# 01-3333-41

Experimental models: Human cell lines and PDX

CHO-K1 (female) ATCC RRID:CVCL_0213
NGP (male) Dr. John Maris (CHOP) RRID:CVCL_2141
NGP-NPC2 (male) Dr. John Maris (CHOP) N/A
SMS-SAN (female) Dr. John Maris (CHOP) RRID:CVCL_7136
NBSD (female) Dr. John Maris (CHOP) RRID:CVCL_LF68
ST16-BM4045 (male, diagnostic) This manuscript N/A

Software and algorithms

FlowJo v10.7.1 BD Biosciences https://www.flowjo.com/solutions/flowjo/downloads
GraphPad Prism v8.4 GraphPad Software, Inc. https://www.graphpad.com/updates
BioRender BioRender https://www.biorender.com

Other

LSRFortessa X-20 4 lasers (405 nM violet, 488 nM blue, 640 nM red, and 355 nM UV) BD Biosciences N/A
Fixable viability dye eFluor 780 Thermo Fisher Scientific (eBioscience) Cat# 65-0865-14
Brilliant stain buffer BD Biosciences Cat# 566349
Human BD Fc Block BD Biosciences Cat# 564219
Corning Cellstripper dissociation reagent Corning Cat# MT25056CI
Ficoll-Paque PLUS density gradient media Cytiva Cat# 17144002
Gibco DPBS, no calcium, no magnesium Thermo Fisher Scientific Cat# 14190144
Invitrogen EDTA (0.5 M), pH 8.0, RNase-free Thermo Fisher Scientific Cat# AM9260G
Fetal bovine serum, qualified, heat inactivated Thermo Fisher Scientific Cat# 16140071
Corning Falcon round-bottom polystyrene test tubes with cell strainer snap cap Fisher Scientific Cat# 08-771-23
Nalgene Mr. Frosty freezing container Thermo Fisher Scientific Cat# 5100-0001
Corning Costar 96-well, cell culture treated, U-shaped-bottom microplate Fisher Scientific Cat# 07-200-95
Corning Falcon 15 mL conical centrifuge tubes Fisher Scientific Cat# 14-959-49D
RPMI 1640 medium, no glutamine Thermo Fisher Scientific Cat# 21870092