Antibodies |
|
Human CD13-BUV737 (clone L138, 1:40) |
BD Biosciences |
Cat# 749265 |
Human CD45-PerCp-Cy5.5 (clone HI30, 1:25) |
Thermo Fisher Scientific |
Cat# 45-0459-42 |
Human GPC2 (clone D3, PE labeled, 1:200) |
Dr. Dimiter S. Dimitrov (University of Pittsburgh) |
N/A |
Human GD2-BV510 (clone 14g2a, 1:20) |
BioLegend |
Cat# 357316 |
Human NCAM-BV605 (clone 5.1H11, 1:100) |
BioLegend |
Cat# 362538 |
Human L1CAM-BV421 (clone 5G3, 1:200) |
BD Biosciences |
Cat# 565732 |
Human L1CAM-PE (clone 5G3, 1:200) |
BD Biosciences |
Cat# 564193 |
Human ALK (clone 48, APC labeled, 1:500) |
Mark Vigny |
N/A |
Human B7-H3-PE-Cy7 (clone MIH42, 1:40) |
BioLegend |
Cat# 351008 |
|
Biological samples |
|
Human neuroblastoma-infiltrated bone marrow samples |
Stanford Pediatrics Bass Center Tissue Bank (IRB: #45458 and #56619) |
N/A |
Human bone marrow samples from B-ALL patients (uninvolved tumor-free at remission) |
Stanford Pediatrics Bass Center Tissue Bank (IRB: #45458 and #56619) |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Abcam PE Conjugation Kit Lightning-Link |
Abcam |
Cat# ab102918 |
Abcam APC Conjugation Kit Lightning-Link |
Abcam |
Cat# ab201807 |
BD Quantibrite PE beads |
BD Biosciences |
Cat# 340495 |
BD custom quantitation beads in APC |
BD Biosciences |
Custom 626425 |
BD custom quantitation beads in PE-Cy7 |
BD Biosciences |
Custom 625639 |
BD custom quantitation beads in BV421 |
BD Biosciences |
Custom 625508 |
BD custom quantitation beads in BV510 |
BD Biosciences |
Custom 625594 |
BD custom quantitation beads in BV605 |
BD Biosciences |
Custom 625638 |
UltraComp eBeads Plus compensation beads |
Thermo Fisher Scientific |
Cat# 01-3333-41 |
|
Experimental models: Human cell lines and PDX |
|
CHO-K1 (female) |
ATCC |
RRID:CVCL_0213 |
NGP (male) |
Dr. John Maris (CHOP) |
RRID:CVCL_2141 |
NGP-NPC2 (male) |
Dr. John Maris (CHOP) |
N/A |
SMS-SAN (female) |
Dr. John Maris (CHOP) |
RRID:CVCL_7136 |
NBSD (female) |
Dr. John Maris (CHOP) |
RRID:CVCL_LF68 |
ST16-BM4045 (male, diagnostic) |
This manuscript |
N/A |
|
Software and algorithms |
|
FlowJo v10.7.1 |
BD Biosciences |
https://www.flowjo.com/solutions/flowjo/downloads |
GraphPad Prism v8.4 |
GraphPad Software, Inc. |
https://www.graphpad.com/updates |
BioRender |
BioRender |
https://www.biorender.com |
|
Other |
|
LSRFortessa X-20 4 lasers (405 nM violet, 488 nM blue, 640 nM red, and 355 nM UV) |
BD Biosciences |
N/A |
Fixable viability dye eFluor 780 |
Thermo Fisher Scientific (eBioscience) |
Cat# 65-0865-14 |
Brilliant stain buffer |
BD Biosciences |
Cat# 566349 |
Human BD Fc Block |
BD Biosciences |
Cat# 564219 |
Corning Cellstripper dissociation reagent |
Corning |
Cat# MT25056CI |
Ficoll-Paque PLUS density gradient media |
Cytiva |
Cat# 17144002 |
Gibco DPBS, no calcium, no magnesium |
Thermo Fisher Scientific |
Cat# 14190144 |
Invitrogen EDTA (0.5 M), pH 8.0, RNase-free |
Thermo Fisher Scientific |
Cat# AM9260G |
Fetal bovine serum, qualified, heat inactivated |
Thermo Fisher Scientific |
Cat# 16140071 |
Corning Falcon round-bottom polystyrene test tubes with cell strainer snap cap |
Fisher Scientific |
Cat# 08-771-23 |
Nalgene Mr. Frosty freezing container |
Thermo Fisher Scientific |
Cat# 5100-0001 |
Corning Costar 96-well, cell culture treated, U-shaped-bottom microplate |
Fisher Scientific |
Cat# 07-200-95 |
Corning Falcon 15 mL conical centrifuge tubes |
Fisher Scientific |
Cat# 14-959-49D |
RPMI 1640 medium, no glutamine |
Thermo Fisher Scientific |
Cat# 21870092 |