Table 1.
Generation coherence evaluation. Coherence is measured as the fraction of times the decodings of random points from the latent space are from the same class (cancer type for TCGA, cell type for RNA+ATAC-Seq and CITE-Seq). Higher is better. Note that MCIA is not generative and cannot be evaluated in this setting
| Model | TCGA (GE+ME) | RNA+ATAC | CITE-seq |
|---|---|---|---|
| MCIA | N/A | N/A | N/A |
| MOFA+ | 0.53 | 0.84 | 0.62 |
| CGVAE | 0.81 | 0.85 | 0.56 |
| ccVAE | 0.75 | 0.89 | 0.49 |
| TotalVI | N/A | N/A | 0.47 |
| UniPort | 0.57 | 0.83 | 0.33 |
| PoE | 0.50 | 0.74 | 0.30 |
| MoE | 0.27 | 0.78 | 0.50 |