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. Author manuscript; available in PMC: 2023 Nov 29.
Published in final edited form as: Infect Genet Evol. 2020 Dec 13;90:104677. doi: 10.1016/j.meegid.2020.104677

Figure 1:

Figure 1:

Figure 1:

Figure 1:

Figure 1:

Figure 1:

Sections from the phytogenies of HIV sequences of subtype C (a-b), CRF01_AE (c-d) and CRF07_BC (e) sampled in San Francisco during 2000-2016. Relationships between sequences from patients A-D, F-I, and P-S each suggest three local transmissions. Sequences from patients K-N suggest two or three local transmissions. (Two were counted.) Relationships between sequences from patients W-Z and AA suggest four local transmissions. The pair of sequences from patients V and W (top of e) were counted as one local transmission. The solitary position (among reference sequences) of sequences from patients E, J, O, T and U indicate migration from outside the study population.