Table 3.
Novel for Vitamin D Levels Loci—the GWAS Catalog Traits Associated with Vitamin D Metabolism
| Locus | Lead SNP | Genomic position | Previously reported to GWAS catalog trait(s) |
|---|---|---|---|
| 17 | rs2241823 | 3: 63862842-64003983 | Glomerular filtration rate54 |
| 19 | rs6779146 | 3: 135798658-136507818 | Body mass index,50 Liver enzyme levels,51 Waist-hip ratio52 |
| 25 | rs904612 | 5: 139053438-139095473 | Fat-free mass55 |
| 45 | rs7948931 | 11: 82987208-83335764 | Oily fish consumption56 |
| 49 | rs7313797 | 12: 109849297-110042348 | Oily fish consumption,56 Total cholesterol levels57 |
| 50 | rs2464196 | 12: 121384495-121471337 | Gamma glutamyl transferase levels,58 Total cholesterol levels58 |
| 51 | rs79478560 | 12: 124388511-124496316 | Waist-hip index,59 Body mass index60 |
| 53 | rs17522122 | 14: 33292743-33309495 | Body mass index52 |
| 57 | rs12905223 | 15: 84672181-85280792 | Waist circumference adjusted for body mass index50 |
| 62 | rs78004870 | 16: 89736352-89886392 | Low tan response53 |
| 64 | rs11263770 | 17: 34825861-34952964 | Body mass index52 |
Note: Genomic position: Chromosome: lead SNP pair base lower threshold position—upper threshold position.