TABLE 1.
Viral isolates used to construct mock viral communities of varying complexity d
| Family | Genus | Virus | Acronym | Genome | Code a | Host b | Sequence accession number(s) |
|---|---|---|---|---|---|---|---|
| Alphaflexiviridae | Allexivirus | Shallot virus X | ShVX | ssRNA(+) | PV-0622 | Chenopodium murale | MW854280 |
| Alphaflexiviridae | Potexvirus | Lettuce virus X | LeVX | ssRNA(+) | PV-0904 | Nicotiana benthamiana | MW248356 |
| Benyviridae | Benyvirus | Beet necrotic yellow vein virus | BNYVV | ssRNA(+) | PV-0467 | Chenopodium quinoa | OK181765-67; M36896 |
| Betaflexiviridae | Capillovirus | Apple stem grooving virus | ASGV | ssRNA(+) | PV-0199 | Chenopodium quinoa | MW582790 |
| Betaflexiviridae | Carlavirus | Poplar mosaic virus | PopMV | ssRNA(+) | PV-0341 | Nicotiana benthamiana | ON924213 |
| Betaflexiviridae | Trichovirus | Apple chlorotic leaf spot virus | ACLSV | ssRNA(+) | PV-0998 | Chenopodium quinoa | OK340218-19 c |
| Betaflexiviridae | Tepovirus | Potato virus T | PVT | ssRNA(+) | PV-1145 | Nicotiana hesperis | MZ405665 |
| Bromoviridae | Alfamovirus | Alfalfa mosaic virus | AMV | ssRNA(+) | PV-0779 | Nicotiana tabacum “Samsun nn” | MZ405653-55 |
| Bromoviridae | Anulavirus | Pelargonium zonate spot virus | PZSV | ssRNA(+) | PV-0259 | Nicotiana glutinosa “24A” | ON398493-95 |
| Bromoviridae | Bromovirus | Brome mosaic virus | BMV | ssRNA(+) | PV-0194 | Hordeum vulgare | MW582787-89 |
| Bromoviridae | Cucumovirus | Peanut stunt virus | PSV | ssRNA(+) | PV-0190 | Nicotiana benthamiana | MW307259-61 |
| Bromoviridae | Ilarvirus | Parietaria mottle virus | PMoV | ssRNA(+) | PV-0400 | Chenopodium quinoa | MZ405646-48 |
| Closteroviridae | Closterovirus | Beet yellows virus | BYV | ssRNA(+) | PV-1260 | Beta macrocarpa | MT815988 |
| Closteroviridae | Crinivirus | Tomato chlorosis virus | ToCV | ssRNA(+) | PV-1242 | Solanum lycopersicum | ON398512-13 |
| Potyviridae | Bymovirus | Barley yellow mosaic virus | BaYMV | ssRNA(+) | PV-0634 | Hordeum vulgare | OL311692-93 |
| Potyviridae | Ipomovirus | Cucumber vein yellowing virus | CVYV | ssRNA(+) | PV-0776 | Cucumis sativus | OK181771 |
| Potyviridae | Potyvirus | Bidens mottle virus | BiMoV | ssRNA(+) | PV-0752 | Nicotiana benthamiana | ON398504 |
| Potyviridae | Rymovirus | Agropyron mosaic virus | AgMV | ssRNA(+) | PV-0729 | Triticum aestivum | OM471970 |
| Potyviridae | Tritimovirus | Brome streak mosaic virus | BrSMV | ssRNA(+) | PV-0431 | Hordeum vulgare | OP357935 |
| Potyviridae | Unassigned | Spartina mottle virus | SpMV | ssRNA(+) | PV-0970 | Spartina sp. | MN788417 |
| Secoviridae | Cheravirus | Arracacha virus B | AVB | ssRNA(+) | PV-0082 | Chenopodium murale | MW582785-86 |
| Secoviridae | Comovirus | Squash mosaic virus | SqMV | ssRNA(+) | PV-0581 | Cucurbita pepo | ON398498-99 |
| Secoviridae | Fabavirus | Broad been wilt virus 1 | BBWV-1 | ssRNA(+) | PV-0067 | Chenopodium quinoa | MT663310-11 |
| Secoviridae | Nepovirus | Tomato black ring virus | TBRV | ssRNA(+) | PV-0191 | Nicotiana clevelandii | MW057704-05 |
| Secoviridae | Sequivirus | Carrot necrotic dieback virus | CNDV | ssRNA(+) | PV-0976 | Nicotiana benthamiana | MW080951 |
| Secoviridae | Stralirivirus | Strawberry latent ringspot virus | SLRSV | ssRNA(+) | PV-0247 | Chenopodium quinoa | MZ405640-41 |
| Solemoviridae | Sobemovirus | Rice yellow mottle virus | RYMV | ssRNA(+) | PV-0732 | Oryza sativa | MT701719 |
| Solemoviridae | Enamovirus | Pea enation mosaic virus 1 | PEMV1 | ssRNA(+) | PV-0088 | Pisum sativum | MW961146 |
| Solemoviridae | Polerovirus | Cucurbit aphid-borne yellows virus | CABYV | ssRNA(+) | PV-1017 | Physalis floridana | MZ202344 |
| Tombusviridae | Alphacarmovirus | Calibrachoa mottle virus | CbMV | ssRNA(+) | PV-0611 | Chenopodium quinoa | OK181769 |
| Tombusviridae | Alphanecrovirus | Tobacco necrosis virus A | TNV-A | ssRNA(+) | PV-0186 | Chenopodium quinoa | MT675968 |
| Tombusviridae | Aureusvirus | Johnsongrass chlorotic stripe mosaic virus | JCSMV | ssRNA(+) | PV-0605 | Zea mays | MT682309 |
| Tombusviridae | Betacarmovirus | Turnip crinkle virus | TCV | ssRNA(+) | PV-0293 | Nicotiana benthamiana | OK181761 |
| Tombusviridae | Betanecrovirus | Beet black scorch virus | BBSV | ssRNA(+) | PV-0951 | Chenopodium quinoa | OK058516 |
| Tombusviridae | Dianthovirus | Carnation ringspot virus | CRSV | ssRNA(+) | PV-0097 | Nicotiana clevelandii | MT682300-01 |
| Tombusviridae | Gammacarmovirus | Melon necrotic spot virus | MNSV | ssRNA(+) | PV-0378 | Cucumis sativus | ON398496 |
| Tombusviridae | Machlomovirus | Maize chlorotic mottle virus | MCMV | ssRNA(+) | PV-1087 | Zea mays | OK181780 |
| Tombusviridae | Pelarspovirus | Pelargonium line pattern virus | PLPV | ssRNA(+) | PV-0193 | Chenopodium quinoa | MW854266 |
| Tombusviridae | Tombusvirus | Tomato bushy stunt virus | TBSV | ssRNA(+) | PV-0268 | Nicotiana clevelandii | MW582792 |
| Tombusviridae | Umbravirus | Carrot mottle virus | CMoV | ssRNA(+) | PV-0968 | Nicotiana benthamiana | OK058520 |
| Tombusviridae | Umbravirus | Pea enation mosaic virus 2 | PEMV2 | ssRNA(+) | PV-0088 | Pisum sativum | MW961147; MW961148 c |
| Tospoviridae | Orthotospovirus | Impatiens necrotic spot virus | INSV | ssRNA(+/-) | PV-0280 | Nicotiana benthamiana | MW582795-97 |
| Tymoviridae | Tymovirus | Turnip yellow mosaic virus | TYMV | ssRNA(+) | PV-0299 | Brassica rapa | ON924209 |
| Virgaviridae | Furovirus | Soil-borne wheat mosaic virus | SBWMV | ssRNA(+) | PV-0748 | Triticum aestivum | MZ405651-52 |
| Virgaviridae | Hordeivirus | Barley stripe mosaic virus | BSMV | ssRNA(+) | PV-0330 | Hordeum vulgare | ON924210-12 |
| Virgaviridae | Pecluvirus | Peanut clump virus | PCV | ssRNA(+) | PV-0291 | Nicotiana benthamiana | MW961156-57 |
| Virgaviridae | Pomovirus | Potato mop-top virus | PMTV | ssRNA(+) | PV-0582 | Nicotiana benthamiana | ON398500-02 |
| Virgaviridae | Tobamovirus | Paprika mild mottle virus | PaMMV | ssRNA(+) | PV-0606 | Nicotiana benthamiana | OK181768 |
| Virgaviridae | Tobravirus | Pea early-browning virus | PEBV | ssRNA(+) | PV-0298 | Chenopodium quinoa | MW854268-69 |
| Not assigned | Idaeovirus | Raspberry bushy dwarf virus | RBDV | ssRNA(+) | PV-0053 | Chenopodium quinoa | MW582777-78 |
| Rhabdoviridae | Cytorhabdovirus | Lettuce necrotic yellows virus | LNYV | ssRNA(−) | PV-0085 | Nicotiana glutinosa “24A” | MZ202327 |
| Rhabdoviridae | Varicosavirus | Beet oak leaf virus | BOLV | ssRNA(−) | PV-1034 | Spinacia oleracea | OQ975887-88 |
| Rhabdoviridae | Alphanucleorhabdovirus | Physostegia chlorotic mottle virus | PhCMoV | ssRNA(−) | PV-1182 | Nicotiana occidentalis “37B” | KX636164 |
| Rhabdoviridae | Betanucleorhabdovirus | Sonchus yellow net virus | SYNV | ssRNA(−) | PV-0052 | Nicotiana clevelandii | MT613317 |
| Aspiviridae | Ophiovirus | Lettuce ring necrosis virus | LRNV | ssRNA(−) | PV-0983 | Nicotiana occidentalis “P1” | ON398506-09 |
| Partitiviridae | Alphacryptovirus | Poinsettia latent virus | PnLV | dsRNA | PV-0629 | Euphorbia pulcherrima | ON398503 |
| Caulimoviridae | Badnavirus | Banana streak OL virus | BSOLV | dsDNA-RT | PV-0492 | Musa sp. | OQ102041 |
| Caulimoviridae | Caulimovirus | Cauliflower mosaic virus | CaMV | dsDNA-RT | PV-0229 | Brassica rapa | OP947586 |
| Geminiviridae | Begomovirus | Squash leaf curl virus | SLCV | ssDNA | PV-1299 | Cucurbita pepo | MW582809-10 |
| Geminiviridae | Mastrevirus | Maize streak virus | MSV | ssDNA | PV-1103 | Zea mays | OQ102042-44 |
| Nanoviridae | Babuvirus | Banana bunchy top virus | BBTV | ssDNA | PV-1166 | Musa sp. | OQ102052-57 |
a
DSMZ catalog code.
b
Host in which the virus isolate was propagated and lyophilized.
c
Several variants are present in the propagated sample and accession numbers for the variants are provided.
d
The taxonomic status of the various viruses is indicated, together with their DSMZ catalog code, their propagation host, and the GenBank accession number(s) of their genomic sequence(s).