TABLE 2.
Additional viruses identified by analysis of the HTS data in the samples used to assemble the synthetic mock communities of varying complexity
| Family | Genus | Virus | Acronym | Genome type | Reference sequence accession number a |
|---|---|---|---|---|---|
| Virgaviridae | Tobamovirus | Tobacco mosaic virus | TMV | ssRNA(+) | OQ953825 |
| Tymoviridae | Unassigned | Poinsettia mosaic virus | PnMV | ssRNA(+) | OQ953828 |
| Endornaviridae | Alphaendornavirus | Hordeum vulgare endornavirus | HvEV | ssRNA(+) | OQ953829 |
| Solemoviridae | Polerovirus | Turnip yellows virus | TuYV | ssRNA(+) | JQ862472 |
| Geminiviridae | Mastrevirus | Maize streak Réunion virus | MSRV | ssDNA | OQ953826 |
| Totiviridae | Unassigned | Maize-associated totivirus | MATV | dsRNA | OQ953827 |
| Totiviridae | Unassigned | Maize-associated totivirus 2 | MTV-2 | dsRNA | MN428829 |
| Mitoviridae | Duamitovirus | Chenopodium quinoa mitovirus 1 | CqMV1 | ssRNA(+) | MT089917 |
| Small linear ssRNA satellite | Turnip crinkle satellite RNA F | TCVsatRNA F | ssRNA | X12749 | |
| Small linear ssRNA satellite | Pea enation mosaic virus satellite RNA | PEMVsatRNA | ssRNA | OQ953831 | |
| Small linear ssRNA satellite | Strawberry latent ringspot virus satellite RNA | SLRSVsatRNA | ssRNA | OQ953830 | |
a
Accession number of the closest sequence in GenBank that was used as reference for reads mapping.