TABLE 5.
Detection performance of VANA, dsRNA, and RNASeq methods at the level of individual viral genomic molecules (from a total of 115 viral molecules) using the most complex, 60-viruses pool, for groups of viruses with different genome types at 10M reads sequencing depth
| # viral molecules | VANA | dsRNA | RNASeq | ||||
|---|---|---|---|---|---|---|---|
| # detected | % detected | # detected | % detected | # detected | % detected | ||
| +ssRNA viruses | 86 | 50 | 58.1% | 77 | 89.5% | 81 | 96.,3% |
| ssRNA viruses | 12 | 1 | 8.3% | 5 | 41.7% | 12 | 100% |
| RNA satellites | 3 | 1 | 33.3% | 3 | 100% | 2 | 66.,6% |
| dsRNA viruses | 2 | 0 | 0% | 2 | 100% | 0 | 0,0% |
| ssDNA viruses | 10 | 4 | 40.0% | 0 | 0% | 4 | 40.0% |
| dsDNA viruses | 2 | 1 | 50.0% | 1 | 50.0% | 1 | 50.0% |
| Total | 115 | 57 | 49.6% | 88 | 76.5% | 100 | 87.7% |