Table 3.
Top-ranked associations in the exome-wide analysis
Gene | ID | Chr : position | Function | EA | RA | Minor Allele Frequency | OR | P-value * | ||
---|---|---|---|---|---|---|---|---|---|---|
AD | Control | EUR | ||||||||
APOE | rs429358 | 19:44908684 | exonic | C | T | 0.28 | 0.12 | 0.16 | 2.79 | 4.52x10−52 |
TREM2 | rs75932628 | 6:41161514 | exonic | T | C | 0.036 | 0.011 | 0.0023 | 3.16 | 2.64x10−10 |
SMAP2 | rs1003710 | 1:40374681 | 5’ UTR | A | G | 0.40 | 0.46 | 0.44 | 0.77 | 1.91x10−7 |
ZNF890P | rs200698976 | 7:5132414 | intronic | TG | T | 0.28 | 0.34 | 0.31 | 0.76 | 3.49x10−7 |
TRAPPC8 | rs149840013 | 18:31839471 | intronic | A | G | 0.0042 | 0.028 | 0.0022 | 0.16 | 1.53x10−6 |
DMWD | rs138963867 | 19:45786302 | exonic | A | G | 0.021 | 0.0077 | 0.0013 | 2.98 | 1.78x10−6 |
OR7C2 | rs113508813 | 19:14942161 | exonic | A | G | 0.033 | 0.054 | 0.000071 | 0.55 | 1.81x10−6 |
SLC43A3 | rs117212150 | 11:57414602 | intronic | T | C | 0.099 | 0.068 | 0.015 | 1.52 | 2.19x10−6 |
DOCK9 | rs2296984 | 13:98805177 | exonic | G | T | 0.21 | 0.17 | 0.20 | 1.34 | 3.26x10−6 |
significance threshold P=2.74x10−7
Chr: chromosome; EA: effect allele; RA: reference allele; EUR: European reference population; OR: odds ratio