Table 3.
Methylation motifs detected in the wild A45 and four mutants.a
| Wild-type | Total number in genome (+/− strand) | hpy | hp1352 | hp91/92 | hp944 |
|---|---|---|---|---|---|
| ATTAAT | 441/441 | ATTAAT | ATTAAT | ATTAAT | ATTAAT |
| GTNNAC | 325/325 | GTNNAC | GTNNAC | GTNNAC | GTNNAC |
| GGRGA | 1768/1790 | GGRGA | GGRGA | GGRGA | GGRGA |
| CCATC | 1163/1115 | CCATC | CCATC | CCATC | CCATC |
| CATG | 7246/7246 | CATG | CATG | CATG | |
| CCAG | 2173/2271 | CCAG | CCAG | CCAG | |
| GCGC | 5982/5982 | GCGC | GCGC | GCGC | GCGC |
| GANTC | 2625/2625 | GANTC | GANTC | GANTC | |
| GATC | 5113/5113 | GATC | GATC | GATC | |
| GGCC | 1534/1534 | GGCC | GGCC | GGCC | GGCC |
| GAAC | 2760/2700 | GAAC | GAAC | GAAC | GAAC |
| TGCA | 5770/5770 | TGCA | TGCA | TGCA | TGCA |
| TCGA | 290/290 | TCGA | TCGA | TCGA | TCGA |
| TCNGA | 1224/1224 | TCNGA | TCNGA | TCNGA | TCNGA |
| TCNNGA | 1926/1926 | TCNNGA | TCNNGA | TCNNGA | TCNNGA |
| 3403/3267 | CCAAK | CCAAK |
a
Interestingly, in the hpy and hp91/92 mutants an additional CCAAK methylation motif is observed.