Table 3. Software tools and versions used.

Software tool	Version	Source
BlobToolKit	4.0.7	Challis et al., 2020
gEVAL	N/A	Chow et al., 2016
Hifiasm	0.16.1-r375	Cheng et al., 2021
HiGlass	1.11.6	Kerpedjiev et al., 2018
MitoHiFi	2	Uliano-Silva et al., 2022
PretextView	0.2	Harry, 2022
purge_dups	1.2.3	Guan et al., 2020
YaHS	yahs-1.1.91eebc2	Zhou et al., 2023