Figure 3:

Correlated Gene Modules Associate with Survival and Clinical Response. A: Heatmap of module scores (as average scaled expression change of module genes) for each patient, including annotation for clinical response and mutational subtype. B: Forest plot of multiple Cox regression of survival with each module score. C: Kaplan-Meier survival curves with groups split by module 6 score median. P-value indicates log-rank test according to median high/low group. D: Waterfall plot of module 6 scores colored by clinical therapy response (CR/PR=complete response/partial response, SD=stable disease, PD=progressive disease).