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[Preprint]. 2025 Mar 6:2023.09.27.559801. [Version 3] doi: 10.1101/2023.09.27.559801

Figure 2: Visualization the dereplication of 66 Cutibacterium avidum genomes using skDER and CiDDER with granet.

Figure 2:

The programs skDER and CiDDER were run to download and dereplicate 66 genomes classified as C. avidum in GTDB release 220. Afterwards, the granet tool was used to generate network visualizations for the A) skDER greedy, B) skDER dynamic, and C) CiDDER runs. Nodes correspond to different genomic assemblies and edge connections represent pairs of genomes exhibit ≥99% ANI and a maximal AF ≥90%. Genomes selected as representatives are shown in red.