Organisation acronyms, names and links	URL
BBMRI: Biobanking and Biomolecular Resources Research Infrastructure	https://www.bbmri‐eric.eu/
EATRIS: European infrastructure for translational medicine (European Advanced Translational Research Infrastructure in Medicine)	https://eatris.eu/
EBI: European Bioinformatics Institute	https://www.ebi.ac.uk/
EC: European Commission	https://commission.europa.eu
ECRIN: European Clinical Research Infrastructure Network	https://ecrin.org/
ELIXIR	https://elixir‐europe.org/
EMBL: European Molecular Biology Laboratory	https://www.embl.org/
EMBRC: European Marine Biological Resource Centre	https://www.embrc.eu/
ERINHA: European Research Infrastructure on Highly Pathogenic Agents	http://www.erinha.eu
EOSC: European Open Science Cloud	https://eosc‐portal.eu/
ESFRI: European Strategy Forum Research Infrastructure	https://www.esfri.eu/
EU‐OPENSCREEN	https://www.eu‐openscreen.eu/
Euro‐BioImaging	https://www.eurobioimaging.eu/
GA4GH: Global Alliance for Genomics and Health	https://www.ga4gh.org/
GSO: Group of Senior Officials on global Research Infrastructures	http://www.gsogri.org/
INFRAFRONTIER	https://www.infrafrontier.eu/
INSTRUCT	https://instruct‐eric.org/
ISBE: Infrastructure for Systems Biology in Europe	https://cordis.europa.eu/project/id/312455
MIRRI: Microbial Resource Research Infrastructure	https://www.mirri.org/
NEUBIAS: Network of EUropean BioImage Analysts	https://eubias.org/NEUBIAS/
NHGRI: National Human Genome Research Institute	https://www.genome.gov
OECD: Organisation for Economic Co‐operation and Development	https://www.oecd.org/
RDA: Research Data Alliance	https://www.rd‐alliance.org/

Project acronyms, names, and links	URL
AgroServ	https://agroserv.eu/
AI4Life	https://ai4life.eurobioimaging.eu
BIOINDUSTRY 4.0	https://cordis.europa.eu/project/id/101094287
BY‐COVID	https://by‐covid.org/
CanSERV	https://www.canserv.eu/
CORBEL (Coordinated Research Infrastructures Building Enduring Life‐science Services)	https://www.corbel‐project.eu
DANUBIUS‐IP	https://www.danubius‐ri.eu/
EMPHASIS (Effective management of pests and harmful alien species – Integrated solutions)	https://www.emphasisproject.eu/
ENVRI‐FAIR	https://envri.eu/home‐envri‐fair/
ESCAPE	https://projectescape.eu/
EOSC4CANCER	https://eosc4cancer.eu/
EOSC‐Life	https://www.eosc‐life.eu/
EuroScienceGateway	https://galaxyproject.org/projects/esg/
FAIRplus	https://fairplus‐project.eu/
FAIR Phytolith project	https://open‐phytoliths.github.io/FAIR‐phytoliths/
FAIRsharing	https://fairsharing.org/
ISIDORe (Integrated Services for Infectious Disease Outbreak Research)	https://isidore‐project.eu/
PaNOSC	https://www.panosc.eu/
Precision Toxicology	https://cordis.europa.eu/project/id/965406
SSHOC	https://sshopencloud.eu/

Other links in footnotes – Part I	URL
ABS Permits	https://oneworldanalytics.com/abspermits/
Amsterdam Declaration on Funding Research Software Sustainability Draft	https://future‐of‐research‐software.org/draft‐amsterdam‐declaration‐on‐funding‐research‐software‐sustainability/
BioContainers	https://biocontainers.pro/
Biological systems modelling JWS Online	https://jjj.biochem.sun.ac.za/
Biomodels	https://www.ebi.ac.uk/biomodels/
Biotracks	https://github.com/CellMigStandOrg/biotracks
Codebases General Guide For Exploring Large Open Source Codebases	https://pncnmnp.github.io/blogs/oss‐guide.html
Conda	https://docs.conda.io/en/latest/
Convention on Biological Diversity (CBD) – Recent agreements	https://www.cbd.int/doc/c/e6d3/cd1d/daf663719a03902a9b116c34/cop‐15‐l‐25‐en.pdf
COVID‐19 data portal	https://www.covid19dataportal.org/
DockerHub	https://hub.docker.com/
ELIXIR's Long‐term sustainability plan (2019)	https://f1000research.com/documents/8‐1642
EMO BON	https://www.embrc.eu/emo‐bon
EOSC‐Life Calls	https://www.eosc‐life.eu/calls/
EOSC‐Life courses websites	https://www.eosc‐life.eu/news/training‐modelling‐covid‐19‐epidemics/
EOSC‐Life Internal Call for Academia‐Industry Collaborations	https://www.eosc‐life.eu/industrycall/
EOSC‐Life Training Open Call	https://www.eosc‐life.eu/services/open‐call‐training/
EOSC‐Life Training	https://www.eosc‐life.eu/services/training/
EOSC SRIA MAR (Strategic Research & Innovation Agenda and its Multi‐Annual Roadmap)	https://www.eosc.eu/sria‐mar
EOSC Task Forces	https://eosc.eu/eosc‐task‐forces
EOSC Task Force PIDs policy and Implementation	https://www.eosc.eu/advisory‐groups/pid‐policy‐implementation
FAIR Cookbook	https://faircookbook.elixir‐europe.org
FAIRsharing Community champions program	https://fairsharing.org/community_champions
FAIRsharing educational material	https://fairsharing.org/educational
Fragalysis	https://fragalysis.diamond.ac.uk/viewer/react/landing/
GDPR	https://gdpr‐info.eu/
GitHub	https://github.com/
GWAS studies	https://www.ebi.ac.uk/gwas/docs/methods/summary‐statistics
INFRASERV	https://rea.ec.europa.eu/funding‐and‐grants/horizon‐europe‐research‐infrastructures/research‐infrastructure‐services‐support‐health‐research‐accelerate‐green‐and‐digital‐transformation_en
ISA Tools	https://isa‐tools.org
ISO 23494	https://www.iso.org/standard/80715.html

Other links in footnotes – Part II	URL
Life‐Monitor	https://app.lifemonitor.eu/
Linked Data	https://www.w3.org/DesignIssues/LinkedData
Long‐Term Sustainability of Research Infrastructures (ESFRI Report)	https://www.esfri.eu/sites/default/files/u4/ESFRI_SCRIPTA_VOL2_web.pdf
Memorandum of Understanding (MoU) with EuroBioimaging and Instruct‐ERIC	https://www.eu‐openscreen.eu/newsroom/eu‐openscreen‐news/ansicht/eu‐openscreen‐has‐signed‐a‐memorandum‐of‐understanding‐mou‐with‐eurobioimaging‐and‐instruct‐eric.html
MGnify	https://docs.mgnify.org/src/docs/analysis.html
MIAPPE	https://www.miappe.org/
Microscopy data analysis	https://www.ebi.ac.uk/training/events/microscopy‐data‐analysis‐0/
Microscopy data analysis: Machine Learning and Bioimage archive	https://www.ebi.ac.uk/training/events/microscopy‐data‐analysis‐machine‐learning‐and‐bioimage‐archive‐2022/
Nagoya Protocol on Access and Benefit‐sharing	https://www.cbd.int/abs/
NAR	https://www.oxfordjournals.org/nar/database/c/
NEUBIAS Training school	https://www.eosc‐life.eu/news/neubias‐defragmentation‐training‐school/
Ontology Cross Reference Service (OxO)	https://www.ebi.ac.uk/spot/oxo/
Ontology Lookup Service (OLS)	https://www.ebi.ac.uk/ols4
Open Microscopy Environment Next‐Generation File Formats (OME‐NGFF)	https://ngff.openmicroscopy.org
OSSDIP	https://www.ifs.tuwien.ac.at/infrastructures/ossdip/
Paper Sprint Method (Michigan University)	https://sph.umich.edu/cehr/pdf/Paper_Sprint_Manual.pdf
Permissive Licences	https://fossa.com/blog/all‐about‐permissive‐licences/
Quay.io	https://quay.io/
RDMKit	https://rdmkit.elixir‐europe.org/
Recommendation of the Council on Enhancing Access to and Sharing of Data	https://legalinstruments.oecd.org/en/instruments/OECD‐LEGAL‐0463
Sourceforge	https://sourceforge.net/
TravisCI	https://www.travis‐ci.com/
World‐cafe	https://theworldcafe.com/key‐concepts‐resources/world‐cafe‐method/
WorkflowHub	https://workflowhub.eu/