TABLE 2.
Kinetic parameters of the modified forms of E. coli UMP kinase at two pH valuesa
| Enzyme | pH 6
|
pH 8
|
||||
|---|---|---|---|---|---|---|
| KmUMP (mM) | KmATP (mM) | VmaxUMP, ATP (μmol/min/mg of protein) | KmUMP (mM)b | KmATP (mM) | VmaxUMP, ATP (μmol/min/mg of protein) | |
| Wild typec | 0.17 ± 0.03 | 0.048 ± 0.004 | 105 ± 5 | 0.043c ± 0.002 | 0.12c ± 0.018 | 128 ± 11 |
| Mutants | ||||||
| R62H | 1.26 ± 0.21 | 0.24 ± 0.03 | 1.5 ± 0.03 | 0.32 ± 0.04 | 3.0 ± 0.2 | 4.4 ± 0.1 |
| D77N | 1.78 ± 0.30 | 0.12 ± 0.02 | 1.9 ± 0.20 | 0.47 ± 0.06 | 0.48 ± 0.12 | 8.2 ± 0.3 |
| D146N | 0.45 ± 0.009 | 0.03 ± 0.006 | 0.15 ± 0.01 | 0.059 ± 0.02 | 0.10 ± 0.03 | 0.32 ± 0.03 |
| D159N | 0.27 ± 0.06 | 0.095 ± 0.003 | 128 ± 13 | 0.052c ± 0.02 | 0.29c ± 003 | 153 ± 5 |
| D168N | 0.32 ± 0.06 | 0.14 ± 0.006 | 63 ± 4.2 | 0.06 ± 0.003 | 0.42 ± 0.01 | 86.6 ± 19 |
| D174N | 3.70 ± 0.36 | 0.17 ± 0.04 | 32 ± 3.5 | 0.31 ± 0.06 | 0.31 ± 0.06 | 45 ± 5 |
| D201N | 0.86 ± 0.16 | 0.20 ± 0.04 | 1.04 ± 0.20 | 0.22 ± 0.06 | 0.46 ± 0.09 | 8.2 ± 0.3 |
The reaction medium is described in Materials and Methods. The apparent Km for ATP and UMP was determined at a single, fixed concentration of cosubstrates. The VmaxUMP, ATP was obtained by extrapolating the reaction rates for infinite concentrations of ATP and UMP and by assuming that the concentration of one nucleotide substrate does not affect the apparent Km of the second nucleotide substrate. The mean values and the standard errors of the means are from three separate experiments.
At pH 8 (or 7.4), where inhibition by excess of UMP occurred, the reaction rates were fitted by the equation v = Vmax [UMP]/(KmUMP + [UMP] + [UMP]2/KI). The calculated KI values were 1.2 mM (wild type), 0.7 mM (D168N), 0.4 mM (D174N), and 0.65 mM (D159N). The other variants of E. coli UMP kinase did not exhibit inhibition by excess of UMP.
From reference 15, kinetic measurements being done at pH 7.4.